metaboscape-application
Science Score: 44.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (7.3%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: CGC-UMCES
- License: gpl-3.0
- Language: HTML
- Default Branch: main
- Homepage: https://metaboscape.cbl.umces.edu/
- Size: 6.52 MB
Statistics
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 5
- Releases: 1
Metadata Files
README.md
Chesapeake Bay Metaboscape Forecasting
This repository contains code for the Chesapeake Bay Metaboscape visualization application at https://metaboscape.cbl.umces.edu, funded by a donation from the Merrill Family Foundation to the Chesapeake Global Collaboratory of the University of Maryland Center for Environmental Science.
The application is still very much a work in progress. A few notes for developers, in the meantime:
Development
- Edit application at
R/app.R - Serve application (see below)
- Repeat.
Note that the image is currently 346MB and takes 6 minutes to build.
If developing on the Chesapeake Biological Laboratory server you will need to
change the port in the
docker compose file
or docker run command from 20688:20688 to someothernumber:20688, as the
toy application is currently running on 20688. Depending on your development
environment, you might need to change the port in
R/app.R
instead. Don't hesitate to reach out with questions regarding this!
Misc. container navigation
Pull image from GitHub Container Registry
docker pull ghcr.io/cgc-umces/metaboscape_app:latest
Build image locally
docker build -t app .
Open container
docker run -it \
-v ./R:/home/R -v ./data:/home/data -v ./brand:/home/brand \
app bash
Open directly into R
docker run -it \
-v ./R:/home/R -v ./data:/home/data -v ./brand:/home/brand \
app R
Serve application
docker compose up -d
or
docker run --rm --name metabo_app -d \
-v ./R:/home/R -v ./data:/home/data -v ./brand:/home/brand \
-p 20688:20688 \
app
Navigate to: http://localhost:20688/
Citation (CITATION.cff)
cff-version: 1.2.0
title: "Chesapeake Metaboscape"
message: "If you use this software, please cite it as below."
type: software
# abstract:
version: 0.1.0
# date-released:
authors:
- name: "The Metaboscape Team"
affiliation: "University of Maryland Center for Environmental Science"
license: GPL-3.0
repository-code: "https://github.com/CGC-UMCES/metaboscape-application"
url: "https://metaboscape.cbl.umces.edu/"
contact:
- family-names: O'Brien
given-names: Michael
email: obrien@umces.edu
affiliation: "University of Maryland Center for Environmental Science"
orcid: "https://orcid.org/0000-0003-1420-6395"
- family-names: Murphy
given-names: Theresa
email: tmurphy@umces.edu
affiliation: "University of Maryland Center for Environmental Science"
keywords:
- "Chesapeake Bay"
- shiny
- metabolism
- "Chesapeake Global Collaboratory"
GitHub Events
Total
- Create event: 7
- Release event: 1
- Issues event: 23
- Delete event: 1
- Issue comment event: 5
- Member event: 1
- Push event: 34
- Pull request event: 2
Last Year
- Create event: 7
- Release event: 1
- Issues event: 23
- Delete event: 1
- Issue comment event: 5
- Member event: 1
- Push event: 34
- Pull request event: 2
Dependencies
- rocker/r2u latest build