germinate-vue

Germinate is an open source plant database infrastructure and application programming platform on which complex data from genetic resource collections can be stored, queried and visualized.

https://github.com/germinateplatform/germinate-vue

Science Score: 75.0%

This score indicates how likely this project is to be science-related based on various indicators:

✓
CITATION.cff file
Found CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
✓
.zenodo.json file
Found .zenodo.json file
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DOI references
Found 2 DOI reference(s) in README
○
Academic publication links
✓
Committers with academic emails
1 of 2 committers (50.0%) from academic institutions
✓
Institutional organization owner
Organization germinateplatform has institutional domain (ics.hutton.ac.uk)
○
JOSS paper metadata
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Scientific vocabulary similarity
Low similarity (13.9%) to scientific vocabulary

Keywords

chemical-compounds climate-data database genetics genotypes germinate mysql pedigree phenotypes plant-genetic-resources vuejs website

Last synced: 6 months ago · JSON representation ·

Repository

Germinate is an open source plant database infrastructure and application programming platform on which complex data from genetic resource collections can be stored, queried and visualized.

Basic Info

Host: GitHub
Owner: germinateplatform
License: apache-2.0
Language: Vue
Default Branch: master
Homepage: https://ics.hutton.ac.uk/get-germinate
Size: 10.7 MB

Statistics

Stars: 17
Watchers: 3
Forks: 5
Open Issues: 4
Releases: 36

Topics

chemical-compounds climate-data database genetics genotypes germinate mysql pedigree phenotypes plant-genetic-resources vuejs website

Created over 6 years ago · Last pushed 6 months ago

Metadata Files

Readme License Code of conduct Citation

Germinate - The generic plant genetic resources database

Logo

Germinate is an open source plant database infrastructure and application programming platform on which complex data from genetic resource collections can be stored, queried and visualized using common, reusable, programming components. Germinate utilises modern web and database standards to provide a common architecture and high performance web-based user interface and analytics functionality across a wide variety of data types including: passport, phenotypic, field trial, pedigree, genetic, climatic, geographic location data as well as user-submitted annotations. In addition, it provides links to an expanding variety of external visualization and analysis tools such as Helium for pedigree visualization, Flapjack for graphical genotyping and CurlyWhirly for 3D coordinate data.

The single point of access for all background data on genetic resources collections that Germinate implements, provides a valuable digital curation resource as well as offering essential continuity on how new data is recorded and presented to researchers and breeders which brings focus and facilitates community building into research communities.

Website

Want to know more? Browse our homepage (https://ics.hutton.ac.uk/get-germinate)

Interactive Demo Instance

If you want to explore Germinate and try out all the features, have a play about with our demo database.

Download

Please consult the online documentation for a variety of options to download and run Germinate yourself.

Contact

If you have any questions or suggestions, please send us an email on germinate@hutton.ac.uk or post an issue.

Acknowledgements

The Germinate Team gratefully acknowledges support by the following organizations who have generously provided us with open source licenses for their software products:

Lokalise

We use Lokalise to manage Germinate's translations.

Funders

We are very grateful for the funding Germinate has received over the years. Below is a list of our main funders who we have worked with closely during the development of Germinate.

The James Hutton Institute logo
Software Development Group logo

Owner

Name: Germinate
Login: germinateplatform
Kind: organization
Email: germinate@hutton.ac.uk

Website: https://ics.hutton.ac.uk/get-germinate
Repositories: 7
Profile: https://github.com/germinateplatform

Citation (CITATION.cff)

cff-version: 1.2.0
identifiers:
  - description: This is our latest publication on Germinate in Crop Science.
    type: doi
    value: "10.1002/csc2.20248"
  - description: This is our publication on Germinate 3 in Crop Science.
    type: doi
    value: "10.2135/cropsci2016.09.0814"
message: If you use this software, please cite it using these metadata.
repository-code: "https://github.com/germinateplatform/germinate-vue"
title: "Germinate - The plant genetic resources database"
version: 4.4.2
license: Apache-2.0
keywords:
  - "plant genetic resources"
  - genotyping
  - phenotyping
  - mcpd
  - passport
  - pedigree
  - trials
  - database
date-released: 2020-06-30
authors:
  - family-names: "Raubach"
    given-names: "Sebastian"
    orcid: "https://orcid.org/0000-0001-5659-247X"
  - family-names: "Kilian"
    given-names: "Benjamin"
  - family-names: "Dreher"
    given-names: "Kate"
    orcid: "https://orcid.org/0000-0003-4652-4398"
  - family-names: "Amri"
    given-names: "Ahmed"
  - family-names: "Bassi"
    given-names: "Filippo"
    name-particle: M
    orcid: "https://orcid.org/0000-0002-1164-5598"
  - family-names: "Boukar"
    given-names: "Ousmane"
  - family-names: "Cook"
    given-names: "Douglas"
  - family-names: "Cruickshank"
    given-names: "Alan"
    orcid: "https://orcid.org/0000-0002-7982-1746"
  - family-names: "Fatokun"
    given-names: "Christian"
  - family-names: "El Haddad"
    given-names: "Noureddine"
  - family-names: "Humphries"
    given-names: "Alan"
    orcid: "https://orcid.org/0000-0002-8700-4340"
  - family-names: "Jordan"
    given-names: "David"
  - family-names: "Kehel"
    given-names: "Zakaria"
  - family-names: "Kumar"
    given-names: "Shiv"
  - family-names: "Labarosa"
    given-names: "Sandy Jan"
  - family-names: "Nguyen"
    given-names: "Loi Huu"
  - family-names: "Mace"
    given-names: "Emma"
  - family-names: "McCouch"
    given-names: "Susan"
  - family-names: "McNally"
    given-names: "Ken"
  - family-names: "Marshall"
    given-names: "David F."
    orcid: "https://orcid.org/0000-0001-9309-2570"
  - family-names: "Mikwa"
    given-names: "Erick Owuor"
  - family-names: "Milne"
    given-names: "Iain"
    orcid: "https://orcid.org/0000-0002-4126-0859"
  - family-names: "Odeny"
    given-names: "Damaris Achieng"
    orcid: "https://orcid.org/0000-0002-3629-3752"
  - family-names: "Plazas"
    given-names: "Mariola"
  - family-names: "Prohens"
    given-names: "Jaime"
    orcid: "https://orcid.org/0000-0003-1181-9065"
  - family-names: "Rieseberg"
    given-names: "Loren H."
  - family-names: "Schafleitner"
    given-names: "Roland"
  - family-names: "Sharma"
    given-names: "Shivali"
    orcid: "https://orcid.org/0000-0001-5314-484X"
  - family-names: "Stephen"
    given-names: "Gordon"
  - family-names: "Tin"
    given-names: "Huynh Quang"
  - family-names: "Togola"
    given-names: "Abou"
    orcid: "https://orcid.org/0000-0001-6155-8292"
  - family-names: "Warschefsky"
    given-names: "Emily"
  - family-names: "Werner"
    given-names: "Peter"
  - family-names: "All our CWR Pre-Breeding Partners and Collaborators"
    given-names: "."
  - family-names: "Shaw"
    given-names: "Paul D."
    orcid: "https://orcid.org/0000-0002-0202-1150"

GitHub Events

Total

Create event: 8
Issues event: 1
Release event: 9
Watch event: 5
Delete event: 4
Issue comment event: 3
Push event: 33
Pull request event: 1

Last Year

Create event: 8
Issues event: 1
Release event: 9
Watch event: 5
Delete event: 4
Issue comment event: 3
Push event: 33
Pull request event: 1

Committers

Last synced: 7 months ago

All Time

Total Commits: 548
Total Committers: 2
Avg Commits per committer: 274.0
Development Distribution Score (DDS): 0.005

Past Year

Commits: 50
Committers: 2
Avg Commits per committer: 25.0
Development Distribution Score (DDS): 0.06

Top Committers

Name	Email	Commits
sebastian-raubach	s**h@h**k	545
Alexandre Pinheiro	4****d	3

Committer Domains (Top 20 + Academic)

hutton.ac.uk: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time

Total issues: 11
Total pull requests: 23
Average time to close issues: 7 months
Average time to close pull requests: 7 days
Total issue authors: 6
Total pull request authors: 3
Average comments per issue: 2.73
Average comments per pull request: 0.78
Merged pull requests: 5
Bot issues: 0
Bot pull requests: 18

Past Year

Issues: 0
Pull requests: 1
Average time to close issues: N/A
Average time to close pull requests: about 3 hours
Issue authors: 0
Pull request authors: 1
Average comments per issue: 0
Average comments per pull request: 2.0
Merged pull requests: 1
Bot issues: 0
Bot pull requests: 0

View more stats

Top Authors

Issue Authors

BoMeyering (3)
illxi (2)
fogliafabrizio (2)
sebastian-raubach (2)
fishpm-anu (1)
brunopnogueira92 (1)

Pull Request Authors

dependabot[bot] (18)
sebastian-raubach (4)
hostand (2)

Top Labels

Issue Labels

question (4) bug (3) confirmed (2) enhancement (2) documentation (1) security (1)

Pull Request Labels

dependencies (18)

Packages

Total packages: 1
Total downloads: unknown

Total dependent packages: 0
Total dependent repositories: 0
Total versions: 36

proxy.golang.org: github.com/germinateplatform/germinate-vue

Documentation: https://pkg.go.dev/github.com/germinateplatform/germinate-vue#section-documentation
License: apache-2.0
Latest release: v4.9.0+incompatible
published 6 months ago

Versions: 36
Dependent Packages: 0
Dependent Repositories: 0

Rankings

Dependent packages count: 5.4%

Average: 5.6%

Dependent repos count: 5.8%

Last synced: 6 months ago

Dependencies

package-lock.json npm

1198 dependencies

package.json npm

@babel/core ~7.12.16 development
@babel/eslint-parser ~7.12.16 development
@vue/cli-plugin-babel ~5.0.0 development
@vue/cli-plugin-eslint ~5.0.0 development
@vue/cli-plugin-router ~5.0.0 development
@vue/cli-plugin-vuex ~5.0.0 development
@vue/cli-service ~5.0.0 development
@vue/eslint-config-standard ~6.1.0 development
eslint ~7.32.0 development
eslint-plugin-import ~2.25.3 development
eslint-plugin-node ~11.1.0 development
eslint-plugin-promise ~5.1.0 development
eslint-plugin-vue ~8.0.3 development
querystring-es3 ~0.2.1 development
sass ~1.32.7 development
sass-loader ~12.0.0 development
vue-template-compiler ~2.6.14 development
@mdi/js ~6.6.96
axios ~0.26.1
bootstrap ~4.6.1
bootstrap-vue ~2.22.0
bootswatch ~4.6.1
citation-js ~0.5.7
core-js ~3.8.3
d3-dsv ~3.0.1
d3-selection ~3.0.0
d3-shape ~3.1.0
dagre ~0.8.5
dagre-d3 ~0.6.4
exif-js ~2.3.0
flag-icons ~6.2.0
i18n-iso-countries ~7.4.0
leaflet ^1.8.0
leaflet-draw ~1.0.4
leaflet-easybutton ~2.4.0
leaflet.heat ~0.2.0
leaflet.markercluster ~1.5.3
leaflet.sync ~0.2.4
path-browserify ~1.0.1
plotly.js ~2.11.1
simplex-noise ~2.4.0
tiny-emitter ~2.1.0
vue ~2.6.14
vue-cool-lightbox ~2.7.1
vue-gtag ~1.16.1
vue-i18n ~8.27.1
vue-plausible ~1.3.1
vue-router ~3.5.1
vue-sidebar-menu ~4.8.1
vue-typeahead-bootstrap ~2.12.0
vue-upload-component ~2.8.22
vue2-leaflet ~2.7.1
vuedraggable ~2.24.3
vuex ~3.6.2
vuex-persistedstate ~4.1.0
zxcvbn ~4.4.2

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docker/Dockerfile docker

node 16-alpine build
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germinate-vue

Science Score: 75.0%

Keywords

Repository

Basic Info

Statistics

Topics

Metadata Files

README.md

Germinate - The generic plant genetic resources database

Website

Interactive Demo Instance

Download

Contact

Acknowledgements

Lokalise

Funders

Owner

Citation (CITATION.cff)

GitHub Events

Total

Last Year

Committers

All Time

Past Year

Top Committers

Committer Domains (Top 20 + Academic)

Issues and Pull Requests

All Time

Past Year

Top Authors

Issue Authors

Pull Request Authors

Top Labels

Issue Labels

Pull Request Labels

Packages

proxy.golang.org: github.com/germinateplatform/germinate-vue

Rankings

Dependencies