createtaxdb - v1.0 - Helpful Hydra - [2025-06-19]

Added

Initial release of nf-core/createtaxdb, created with the nf-core template.

Adds database building support for the following tools:

• (Primarily) nucleotide based
  • Bracken (added by @alxndrdiaz)
  • Centrifuge (added by @jfy133)
  • ganon (added by @jfy133)
  • KMCP (added by @alxndrdiaz)
  • KrakenUniq (added by @jfy133)
  • Kraken2 (added by @alxndrdiaz)
  • MALT (added by @jfy133 and @LilyAnderssonLee)
• (Primarily) protein based
  • DIAMOND (added by @jfy133)
  • Kaiju (added by @jfy133)

Additional optimisation when running with very large number of genomes by @BioWilko.

| Tool | Old Version | New Version | | ---------- | ----------- | ----------- | | Bracken | | 3.1 | | Centrifuge | | 1.0.4.2 | | DIAMOND | | 2.1.12 | | find | | 4.6.0 | | ganon | | 2.1.0 | | kaiju | | 1.10.0 | | KMCP | | 0.9.4 | | Kraken2 | | 2.1.5 | | KrakenUniq | | 1.0.4 | | MALT | | 0.6.2 | | pigz | | 2.8 | | seqkit | | 2.9.0 | | tar | | 1.34 | | MultiQC | | 1.29 | | p7zip | | 16.02 |

Fixed

Dependencies

Deprecated

- Nextflow
Published by jfy133 8 months ago