workshop-reproducible-manuscripts
https://github.com/utrechtuniversity/workshop-reproducible-manuscripts
Science Score: 44.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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○Committers with academic emails
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (7.7%) to scientific vocabulary
Repository
Basic Info
- Host: GitHub
- Owner: UtrechtUniversity
- License: cc-by-4.0
- Language: HTML
- Default Branch: main
- Homepage: https://utrechtuniversity.github.io/workshop-reproducible-manuscripts/
- Size: 6.47 MB
Statistics
- Stars: 3
- Watchers: 1
- Forks: 2
- Open Issues: 4
- Releases: 0
Metadata Files
README.md
Writing Reproducible Manuscripts in R and Python
Welcome! You have arrived in the GitHub repository of the Workshop Reproducible Manuscripts in R and Python. This workshop is developed by Research Data Management Support at Utrecht University, the Netherlands.
Click here to go to the online materials
Workshop description
In this 3-hour workshop, participants will learn to use the Quarto publishing system in conjunction with R or Python to create a publication-ready manuscript that combines data, code, text, and references. More specifically, they will learn how to:
- Create a reproducible project (folder) structure
- Use Markdown syntax effectively for writing text
- Run analyses in code chunks or cells
- Manage references using Zotero and Better BibTex for Zotero
- 'Render' your Quarto project to Word, HTML, and pdf files
Upcoming workshops
We teach this workshop every 2 months, have a look at the agenda for information on dates and locations, and to register for the workshop.
Contributing
The workshop materials themselves are also built with Quarto as a Quarto book. If you are comfortable contributing Quarto content, please feel free to open a Pull Request in this repository. Otherwise, you may also open an Issue in this repository, or contact RDM Support for improvement suggestions.
License
Our workshop material is licensed under a Creative Commons Attribution 4.0 International License.
Owner
- Name: Utrecht University
- Login: UtrechtUniversity
- Kind: organization
- Email: info.rdm@uu.nl
- Location: Utrecht, The Netherlands
- Website: https://www.uu.nl
- Repositories: 85
- Profile: https://github.com/UtrechtUniversity
The central place for managing code and software for Utrecht University researchers and employees
Citation (CITATION.cff)
cff-version: 1.2.0
title: Workshop Writing Reproducible Manuscripts in R and Python
message: 'If you reuse our workshop contents, please cite us!'
type: software
authors:
- name: Research Data Management Support
website: "https://uu.nl/rdm"
email: "info.rdm@uu.nl"
repository-code: 'hhttps://github.com/utrechtUniversity/workshop-reproducible-manuscripts'
url: 'https://utrechtuniversity.github.io/workshop-reproducible-manuscripts/'
abstract: >-
This repository contains the Quarto book that
contains slides and exercises to learn how to use Quarto
to generate a reproducible document that contains R or Python code.
The workshop was developed by Research Data Management Support
at Utrecht University and taught in 2022-2024.
keywords:
- reproducibility
- quarto
- scientific publishing
- research data management
- research compendium
license: CC-BY-4.0
contact:
- name: "Research Data Management Support"
GitHub Events
Total
- Issues event: 10
- Watch event: 1
- Issue comment event: 2
- Push event: 3
Last Year
- Issues event: 10
- Watch event: 1
- Issue comment event: 2
- Push event: 3
Committers
Last synced: 12 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| Dorien Huijser | d****r@o****m | 81 |
| Huijser | d****r@u****l | 10 |
| Moopen | n****n@u****l | 9 |
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: over 1 year ago
All Time
- Total issues: 11
- Total pull requests: 5
- Average time to close issues: 22 days
- Average time to close pull requests: 15 days
- Total issue authors: 2
- Total pull request authors: 2
- Average comments per issue: 0.36
- Average comments per pull request: 0.4
- Merged pull requests: 4
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 3
- Pull requests: 0
- Average time to close issues: N/A
- Average time to close pull requests: N/A
- Issue authors: 2
- Pull request authors: 0
- Average comments per issue: 0.0
- Average comments per pull request: 0
- Merged pull requests: 0
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- DorienHuijser (10)
- nehamoopen (2)
Pull Request Authors
- DorienHuijser (5)
- hanneoberman (1)