code-publishing
A minimal reproducible example for the workshop on Quarto manuscripts. Also includes a reproducibility checklist and instructions for creating your own workflow with your existing project.
Science Score: 75.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 2 DOI reference(s) in README -
✓Academic publication links
Links to: zenodo.org -
○Academic email domains
-
✓Institutional organization owner
Organization lmu-osc has institutional domain (www.osc.uni-muenchen.de) -
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (10.6%) to scientific vocabulary
Repository
A minimal reproducible example for the workshop on Quarto manuscripts. Also includes a reproducibility checklist and instructions for creating your own workflow with your existing project.
Basic Info
- Host: GitHub
- Owner: lmu-osc
- License: other
- Language: Lua
- Default Branch: main
- Homepage: https://lmu-osc.github.io/code-publishing/
- Size: 6.67 MB
Statistics
- Stars: 1
- Watchers: 2
- Forks: 2
- Open Issues: 34
- Releases: 1
Metadata Files
README.md
Code Publishing Tutorial
This repository contains a tutorial on code publishing created for the LMU Open Science Center. It can be viewed online at https://lmu-osc.github.io/code-publishing/.
The tutorial pages are contained in the *.qmd files in the root folder.
All images are contained in the folder images.
Previewing and rendering the tutorial
The tutorial is written in Markdown and uses Quarto to render it as a website. To render the tutorial on your own computer, you need to have Quarto installed.
Further, the R package renv is used to track the project's dependencies.
One can install renv as follows in R:
r
install.packages("renv")
Then, also from within R, one can restore the dependencies tracked with renv:
r
renv::restore()
While you are working on the tutorial, you can preview it as follows:
sh
quarto preview
This will open the tutorial in your browser. If you make any changes, the website will automatically reload.
If you are done editing and would like to render the tutorial to a static website, run the following:
sh
quarto render
Contributing
If you are contributing to this tutorial, please read the contributing notes before.
License
Except where noted otherwise, the narrative text in this tutorial is licensed under CC BY-SA 4.0; the code without any narrative text is also (at your option) available under CC0 1.0.
Owner
- Name: LMU Open Science Center
- Login: lmu-osc
- Kind: organization
- Location: Germany
- Website: https://www.osc.uni-muenchen.de/index.html
- Repositories: 1
- Profile: https://github.com/lmu-osc
Citation (CITATION.cff)
cff-version: 1.2.0
message: "If you use this tutorial, please cite it as below."
authors:
- given-names: Florian
family-names: Kohrt
orcid: 'https://orcid.org/0000-0003-0374-5625'
affiliation: "LMU Munich"
email: fkohrt@anche.no
- given-names: Josephine
family-names: Zerna
orcid: 'https://orcid.org/0000-0003-2892-884X'
- given-names: Christoph
family-names: Scheffel
orcid: 'https://orcid.org/0000-0001-5963-9229'
title: "Code Publishing Tutorial"
version: 0.1.0
doi: "10.5281/zenodo.16631977"
date-released: 2025-07-31
repository-code: 'https://github.com/lmu-osc/code-publishing'
url: 'https://lmu-osc.github.io/code-publishing/'
preferred-citation:
authors:
- given-names: Florian
family-names: Kohrt
orcid: 'https://orcid.org/0000-0003-0374-5625'
email: fkohrt@anche.no
- given-names: Josephine
family-names: Zerna
orcid: "https://orcid.org/0000-0003-2892-884X"
- given-names: Christoph
family-names: Scheffel
orcid: 'https://orcid.org/0000-0001-5963-9229'
title: "Code Publishing Tutorial"
year: 2025
doi: "10.5281/zenodo.16631977"
publisher:
name: "LMU Open Science Center"
ror: "https://ror.org/029e6qe04"
repository-code: 'https://github.com/lmu-osc/code-publishing'
url: 'https://lmu-osc.github.io/code-publishing/'
type: "book"
GitHub Events
Total
- Create event: 7
- Commit comment event: 1
- Release event: 1
- Issues event: 69
- Delete event: 4
- Issue comment event: 80
- Push event: 105
- Pull request review comment event: 7
- Pull request review event: 9
- Pull request event: 14
- Fork event: 1
Last Year
- Create event: 7
- Commit comment event: 1
- Release event: 1
- Issues event: 69
- Delete event: 4
- Issue comment event: 80
- Push event: 105
- Pull request review comment event: 7
- Pull request review event: 9
- Pull request event: 14
- Fork event: 1
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 40
- Total pull requests: 8
- Average time to close issues: about 2 months
- Average time to close pull requests: 12 days
- Total issue authors: 7
- Total pull request authors: 5
- Average comments per issue: 0.85
- Average comments per pull request: 0.75
- Merged pull requests: 6
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 39
- Pull requests: 8
- Average time to close issues: about 1 month
- Average time to close pull requests: 12 days
- Issue authors: 6
- Pull request authors: 5
- Average comments per issue: 0.82
- Average comments per pull request: 0.75
- Merged pull requests: 6
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- fkohrt (20)
- SvonGrebmer (16)
- NeuroShepherd (9)
- MalikaIhle (7)
- FlorianPargent (6)
- DejanaDam (1)
- AlbertoImg (1)
Pull Request Authors
- NeuroShepherd (6)
- fkohrt (1)
- nicebread (1)
- Gnotic (1)
- Riyaaa1 (1)
Top Labels
Issue Labels
Pull Request Labels
Dependencies
- actions/checkout v4 composite
- quarto-dev/quarto-actions/publish v2 composite
- quarto-dev/quarto-actions/setup v2 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-renv v2 composite