spplit

connect species occurrence data to literature

https://github.com/sckott/spplit

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

○
CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
✓
.zenodo.json file
Found .zenodo.json file
○
DOI references
○
Academic publication links
✓
Committers with academic emails
1 of 2 committers (50.0%) from academic institutions
○
Institutional organization owner
○
JOSS paper metadata
○
Scientific vocabulary similarity
Low similarity (6.8%) to scientific vocabulary

Keywords

r r-package rstats

Last synced: 9 months ago · JSON representation

Repository

connect species occurrence data to literature

Basic Info

Host: GitHub
Owner: sckott
License: other
Language: R
Default Branch: master
Homepage: https://sckott.github.io/spplit
Size: 1.3 MB

Statistics

Stars: 7
Watchers: 3
Forks: 0
Open Issues: 21
Releases: 0

Topics

r r-package rstats

Created over 10 years ago · Last pushed over 5 years ago

Metadata Files

Readme Contributing License Code of conduct Codemeta

README.Rmd

spplit
======

```{r echo=FALSE}
knitr::opts_chunk$set(
  warning = FALSE,
  message = FALSE,
  collapse = TRUE,
  comment = "#>",
  cache.path = "inst/cache/"
)
```

[![R-check](https://github.com/sckott/spplit/workflows/R-check/badge.svg)](https://github.com/sckott/spplit/actions/)

`spplit` - connect species occurrence data to literature

docs: 

* `spocc::occ()` to get occurrence data
* `sp_lit_meta()` gather metadata from taxonomic names from occurrence data
* `sp_lit_text()` gather full text from literature metadata
* `sp_lit_names()` extract names from full text
* `sp_parse_names()` parse names into components

## Install

install `rgbif` and `spocc`, then install `spplit`

```{r eval=FALSE}
remotes::install_github(c("ropensci/namext"))
remotes::install_github("sckott/spplit")
```

```{r}
library("spplit")
```

## Meta

* A collaboration with [California Academy of Sciences](http://www.calacademy.org/)
* Please [report any issues or bugs](https://github.com/sckott/spplit/issues)
* License: MIT
* Please note that the spplit project is released with a [Contributor Code of Conduct](https://contributor-covenant.org/version/2/0/CODE_OF_CONDUCT.html). By contributing to this project, you agree to abide by its terms.

Owner

Name: Scott Chamberlain
Login: sckott
Kind: user
Location: Oregon
Company: Fred Hutch Data Science Lab/Office of the Chief Data Officer

Website: https://scottchamberlain.info
Repositories: 227
Profile: https://github.com/sckott

Software Engineer @ Fred Hutch

CodeMeta (codemeta.json)

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GitHub Events

Total

Last Year

Committers

Last synced: over 1 year ago

All Time

Total Commits: 97
Total Committers: 2
Avg Commits per committer: 48.5
Development Distribution Score (DDS): 0.01

Past Year

Commits: 0
Committers: 0
Avg Commits per committer: 0.0
Development Distribution Score (DDS): 0.0

Top Committers

Name	Email	Commits
Scott Chamberlain	m**s@g**m	96
Philipp Boersch-Supan	p**b@u**u	1

Committer Domains (Top 20 + Academic)

usf.edu: 1

Issues and Pull Requests

Last synced: about 1 year ago

All Time

Total issues: 46
Total pull requests: 2
Average time to close issues: 21 days
Average time to close pull requests: 7 minutes
Total issue authors: 3
Total pull request authors: 1
Average comments per issue: 0.57
Average comments per pull request: 1.0
Merged pull requests: 2
Bot issues: 0
Bot pull requests: 0

Past Year

Issues: 0
Pull requests: 0
Average time to close issues: N/A
Average time to close pull requests: N/A
Issue authors: 0
Pull request authors: 0
Average comments per issue: 0
Average comments per pull request: 0
Merged pull requests: 0
Bot issues: 0
Bot pull requests: 0

View more stats

Top Authors

Issue Authors

sckott (26)
pboesu (1)
jeroen (1)

Pull Request Authors

pboesu (1)

Top Labels

Issue Labels

bug (5) usecases (5) Beginner (1)

Pull Request Labels

Dependencies

.github/workflows/R-check.yaml actions

actions/cache v1 composite
actions/checkout v2 composite
actions/upload-artifact main composite
r-lib/actions/setup-pandoc master composite
r-lib/actions/setup-r master composite

.github/workflows/build-docs.yml actions

actions/cache v1 composite
actions/checkout v2 composite
r-lib/actions/setup-pandoc master composite
r-lib/actions/setup-r master composite

DESCRIPTION cran

DBI * imports
RSQLite * imports
data.table * imports
fulltext * imports
rbhl * imports
spocc >= 0.5.0 imports
tibble * imports
knitr * suggests
namext * suggests
testthat * suggests
vcr * suggests

ecosyste.ms

Data

Tools

Indexes

Applications

Experiments

Open Source Science

spplit

Science Score: 36.0%

Keywords

Repository

Basic Info

Statistics

Topics

Metadata Files

README.Rmd

Owner

CodeMeta (codemeta.json)

GitHub Events

Total

Last Year

Committers

All Time

Past Year

Top Committers

Committer Domains (Top 20 + Academic)

Issues and Pull Requests

All Time

Past Year

Top Authors

Issue Authors

Pull Request Authors

Top Labels

Issue Labels

Pull Request Labels

Dependencies