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cloudres

A nextflow pipeline for genome preprocessing, assembly, MLST assignment and AMR detection

https://github.com/maxlcummins/cloudres

Science Score: 13.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ○
    .zenodo.json file
  • ○
    DOI references
  • ○
    Academic links in README
  • ○
    Academic email domains
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (0.2%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

A nextflow pipeline for genome preprocessing, assembly, MLST assignment and AMR detection

Basic Info
  • Host: GitHub
  • Owner: maxlcummins
  • License: mit
  • Language: Nextflow
  • Default Branch: master
  • Size: 110 KB
Statistics
  • Stars: 0
  • Watchers: 1
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Created about 1 year ago · Last pushed about 1 year ago
Metadata Files
Readme Changelog Contributing License Citation

Owner

  • Name: Max Cummins
  • Login: maxlcummins
  • Kind: user
  • Location: Sydney, Australia
  • Company: University of Technology, Sydney

Microbial genomicist at the University of Technology, Sydney

GitHub Events

Total
  • Push event: 7
  • Pull request event: 5
  • Create event: 4
Last Year
  • Push event: 7
  • Pull request event: 5
  • Create event: 4

Dependencies

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modules/nf-core/fastqc/meta.yml cpan
modules/nf-core/multiqc/meta.yml cpan
subworkflows/nf-core/utils_nextflow_pipeline/meta.yml cpan
subworkflows/nf-core/utils_nfcore_pipeline/meta.yml cpan
subworkflows/nf-core/utils_nfschema_plugin/meta.yml cpan
modules/nf-core/fastqc/environment.yml pypi
modules/nf-core/multiqc/environment.yml pypi