sgnf - v1.2.2

1.2.2 (2024-10-26)

Bug Fixes

• chembl (e0b7620)

- Nextflow
Published by chasemc over 1 year ago

sgnf - v1.2.1

1.2.1 (2024-10-26)

Bug Fixes

• chembl and file inputs (499b298)

- Nextflow
Published by chasemc over 1 year ago

sgnf - v1.2.0

1.2.0 (2024-10-26)

Features

• new input methods (0f13632)

Bug Fixes

• remove old, unused config option (bc2e1d8)
• schema, nf-core linting (c4ed53b)

- Nextflow
Published by chasemc over 1 year ago

sgnf - v1.1.1

1.1.1 (2024-10-20)

Bug Fixes

• protein hashing by updating sgpy (47c086a)
• protein hashing by updating sgpy (4318640)

- Nextflow
Published by chasemc over 1 year ago

sgnf - v1.1.0

1.1.0 (2024-10-20)

Features

• bump sgpy version (changes protein hash results) (#109) (dffc236)

- Nextflow
Published by chasemc over 1 year ago

sgnf - v1.0.2

1.0.2 (2024-07-24)

Bug Fixes

• revert base.config and fix micromono (cd9257e)

- Nextflow
Published by chasemc over 1 year ago

sgnf - v1.0.1

1.0.1 (2024-07-24)

Bug Fixes

• update actino,streptomyces config (172e72c)
• update hmm sources, update streptomyces config (64f18c4)

- Nextflow
Published by chasemc over 1 year ago

sgnf - v1.0.0

1.0.0 (2024-07-24)

Miscellaneous Chores

• release 1.0.0 (a8dbf88)

- Nextflow
Published by chasemc over 1 year ago

sgnf - v0.5.7

0.5.7 (2024-07-24)

Bug Fixes

• docker workflow (dfff24f)
• docker workflow (438d669)

- Nextflow
Published by chasemc over 1 year ago

sgnf - v0.5.6

0.5.6 (2024-07-24)

Bug Fixes

• docker workflow (9c11c85)

- Nextflow
Published by chasemc over 1 year ago

sgnf - v0.5.5

0.5.5 (2024-07-24)

Bug Fixes

• docker workflow (8ea2bdc)

- Nextflow
Published by chasemc over 1 year ago

sgnf - v0.5.4

0.5.4 (2024-07-24)

Bug Fixes

• docker versions (6c90f74)

- Nextflow
Published by chasemc over 1 year ago

sgnf - v0.5.3

0.5.3 (2024-07-24)

Bug Fixes

• bump dependencies (e87579c)
• bumping dependencies (cbe0916)
• docker version tag (ef5e8ad)

- Nextflow
Published by chasemc over 1 year ago

sgnf - v0.5.2

0.5.2 (2024-07-24)

Bug Fixes

• dockerfile build (13d77fb)

Miscellaneous Chores

• release 0.5.2 (9ecdf32)

- Nextflow
Published by chasemc over 1 year ago

sgnf - v0.5.1

0.5.1 (2024-07-24)

Bug Fixes

• dockerfile build (5e421b4)

- Nextflow
Published by chasemc over 1 year ago

sgnf - v0.5.0

0.5.0 (2024-07-24)

Features

• annotate fna input with prokka (514d1c6)

Bug Fixes

• hmm git downloads (4f54387)
• update conda env (57042c6)

Miscellaneous Chores

• release 0.5.0 (15aad25)

- Nextflow
Published by chasemc over 1 year ago

sgnf - v0.4.5

0.4.5 (2024-06-21)

Miscellaneous Chores

• release 0.4.5 (cde59ae)

- Nextflow
Published by chasemc over 1 year ago

sgnf - v0.4.4

0.4.4 (2024-02-22)

Miscellaneous Chores

• release 0.4.3 (50fba0c)
• release 0.4.4 (03c4d6c)

- Nextflow
Published by chasemc about 2 years ago

sgnf - v0.4.3

0.4.3 (2024-02-22)

Bug Fixes

• alpine doesn't play well with aws/nextflow (8bfc30a)
• docker container specification (65f2d7d)
• ncbi datasets renaming (fb4bb7e)
• orthologs.config (e50dafd)
• params.antismash_fulljson (d2e4348)
• restore storeDir, was issue with alpine based container (93c77c9)
• update schema (ed493ee)

- Nextflow
Published by chasemc about 2 years ago

sgnf - v0.4.2

0.4.2 (2023-12-08)

Bug Fixes

• fixes #89 (0f1ce5c)

- Nextflow
Published by chasemc about 2 years ago

sgnf - v0.4.1

0.4.1 (2023-11-18)

Bug Fixes

• change from tar to gz (7dde2fd)

- Nextflow
Published by chasemc over 2 years ago

sgnf - v0.4.0

0.4.0 (2023-11-18)

Features

• antismash 7 (8178835)

Bug Fixes

• deprecate 6.1 antismash (bda70d0)

- Nextflow
Published by chasemc over 2 years ago

sgnf - v0.3.12

0.3.12 (2023-11-17)

Bug Fixes

• hmmparse (4c771b9)

- Nextflow
Published by chasemc over 2 years ago

sgnf - v0.3.11

0.3.11 (2023-11-17)

Bug Fixes

• update hmmsearch parsing (7cc82b0)

- Nextflow
Published by chasemc over 2 years ago

sgnf - v0.3.10

0.3.10 (2023-11-17)

Miscellaneous Chores

• release 0.3.10 (2a06777)

- Nextflow
Published by chasemc over 2 years ago

sgnf - v0.3.8

0.3.8 (2023-11-10)

Bug Fixes

• add option to not store antismash tar (63ab839)

- Nextflow
Published by chasemc over 2 years ago

sgnf - v0.3.7

0.3.7 (2023-11-10)

Bug Fixes

• slurm overwrite in custom configs (f13c77f)

- Nextflow
Published by chasemc over 2 years ago

sgnf - v0.3.6

0.3.6 (2023-11-10)

Miscellaneous Chores

• release 0.3.6 (b569cea)

- Nextflow
Published by chasemc over 2 years ago

sgnf - v0.3.5

0.3.5 (2023-11-10)

Bug Fixes

• add antismash version to reports (fc59e1c)
• ncbi datasets (138c9b8)

- Nextflow
Published by chasemc over 2 years ago

sgnf - v0.3.4

0.3.4 (2023-11-10)

Bug Fixes

• move antismash cpus and mem to config (1a74e81)
• prevent antismash from erroring on seqs w/o proteins (f7065d0)
• remove and comment out currently unused computation (7677748)
• update strep config (ddd2299)

- Nextflow
Published by chasemc over 2 years ago

sgnf - v0.3.3

0.3.3 (2023-11-09)

Bug Fixes

• neo4j docker Java must be pinned to jdk 17 (25c0f32)
• rm datasets file input, and fix version output since it changed in v15 (d2c4d90)

- Nextflow
Published by chasemc over 2 years ago

sgnf - v0.3.2

0.3.2 (2023-11-08)

Bug Fixes

• release-please (682a161)

Miscellaneous Chores

• release 0.3.2 (53f839f)

- Nextflow
Published by chasemc over 2 years ago

sgnf - v0.3.1

0.3.1 (2023-11-08)

Bug Fixes

• docker sgpy-base (#71) (ea26118)

- Nextflow
Published by chasemc over 2 years ago

sgnf - v0.3.0

0.3.0 (2023-11-08)

Features

• new release (#69) (2ae0668)

- Nextflow
Published by chasemc over 2 years ago

sgnf - v0.2.6

0.2.6 (2023-10-14)

Bug Fixes

• update ncbi dataset cli (e3af2b8)

- Nextflow
Published by chasemc over 2 years ago

sgnf - v0.2.5

0.2.5 (2023-08-30)

Bug Fixes

• args in mmseqs and change to comma-delimited (5963bc7)
• mac compatibility (e968c7b)
• output an empty conf directory (dce91cc)

- Nextflow
Published by chasemc over 2 years ago

sgnf - v0.2.4

0.2.4 (2023-07-03)

Bug Fixes

• fix configs for nf-tower use (364a40d)

- Nextflow
Published by chasemc over 2 years ago

sgnf - v0.2.3

0.2.3 (2023-07-03)

Bug Fixes

• null hmmlist (e65d199)

- Nextflow
Published by chasemc over 2 years ago

sgnf - v0.2.2

0.2.2 (2023-07-03)

Bug Fixes

• remove unused proteininfotable (be4cb0d)

- Nextflow
Published by chasemc over 2 years ago

sgnf - v0.2.1

0.2.1 (2023-07-03)

Bug Fixes

• bump sgpy version (186c4b1)

- Nextflow
Published by chasemc over 2 years ago

sgnf - v0.2.0

0.2.0 (2023-07-03)

Features

• (#57) (5fba835)

- Nextflow
Published by chasemc over 2 years ago

sgnf - v0.1.7

0.1.7 (2023-07-03)

Bug Fixes

• bump sgpy (6e3d05d)

- Nextflow
Published by chasemc over 2 years ago

sgnf - v0.1.6

0.1.6 (2023-07-02)

Bug Fixes

• (#54) (1610368)

- Nextflow
Published by chasemc over 2 years ago

sgnf - v0.1.5

0.1.5 (2023-06-22)

Bug Fixes

• antismash and numeric types (#49) (744d955)

- Nextflow
Published by chasemc over 2 years ago

sgnf - v0.1.4

0.1.4 (2023-06-22)

Bug Fixes

• antismash (#47) (8a22868)

- Nextflow
Published by chasemc over 2 years ago

sgnf - v0.1.3

0.1.3 (2023-06-21)

Bug Fixes

• bump sgpy (99896f6)

- Nextflow
Published by chasemc over 2 years ago

sgnf - v0.1.2

0.1.2 (2023-06-21)

Bug Fixes

• change default cov id (#44) (b344521)

- Nextflow
Published by chasemc over 2 years ago

sgnf - v0.1.1

0.1.1 (2023-06-21)

Bug Fixes

• python code for antismash.jsonl (b97d5a2)

- Nextflow
Published by chasemc over 2 years ago

sgnf - v0.1.0

0.1.0 (2023-06-21)

Features

• create antismash.jsonl (#41) (3087f13)

- Nextflow
Published by chasemc over 2 years ago

sgnf - v0.0.6

0.0.6 (2023-06-21)

Bug Fixes

• linters (#38) (8cc0ceb)

- Nextflow
Published by chasemc over 2 years ago

sgnf - v0.0.5

0.0.5 (2023-06-19)

Bug Fixes

• bump (48a2b96)

- Nextflow
Published by chasemc over 2 years ago

sgnf - v0.0.4

0.0.4 (2023-06-19)

Bug Fixes

• bump sgpy version (6a35a77)
• make default mmseqs id/cov the same as diamond (003eff5)

- Nextflow
Published by chasemc over 2 years ago

sgnf - v0.0.3

0.0.3 (2023-06-17)

Bug Fixes

• add curl to minimal docker image (0c5d47b)
• antismash docker call (2abe262)

- Nextflow
Published by chasemc over 2 years ago

sgnf - v0.0.2

0.0.2 (2023-06-16)

Bug Fixes

• change ncbi-genome-download docker (295606b)
• loosen accessory version pins in sgpy base docker (ca94c3e)
• ncbi-genome-download error (f881373)
• socialgene is now on PyPI (82af357)

- Nextflow
Published by chasemc over 2 years ago

sgnf - v0.0.1

0.0.1 (2023-06-15)

Bug Fixes

• fixing lint (31e4c0f)
• reset release please (b22acbb)

Miscellaneous Chores

• release 0.0.1 (9d1cf65)

- Nextflow
Published by chasemc over 2 years ago