epiparameterdashboard

Explore the database of epidemiological parameters provided by the {epiparameterDB} package

https://github.com/epiverse-trace/epiparameterdashboard

Science Score: 54.0%

This score indicates how likely this project is to be science-related based on various indicators:

✓
CITATION.cff file
Found CITATION.cff file
✓
codemeta.json file
Found codemeta.json file
✓
.zenodo.json file
Found .zenodo.json file
○
DOI references
○
Academic publication links
✓
Committers with academic emails
1 of 4 committers (25.0%) from academic institutions
○
Institutional organization owner
○
JOSS paper metadata
○
Scientific vocabulary similarity
Low similarity (19.0%) to scientific vocabulary

Keywords from Contributors

spacy-extension interpretability data-profiling interactive transformers retouch reader amd logic amr

Last synced: 7 months ago · JSON representation ·

Repository

Explore the database of epidemiological parameters provided by the {epiparameterDB} package

Basic Info

Host: GitHub
Owner: epiverse-trace
License: other
Language: R
Default Branch: main
Homepage: https://epiverse-trace.github.io/epiparameterDashboard/
Size: 1.73 MB

Statistics

Stars: 0
Watchers: 3
Forks: 0
Open Issues: 4
Releases: 0

Created over 1 year ago · Last pushed about 1 year ago

Metadata Files

Readme Changelog License Citation

README.Rmd

---
output: github_document
---








```{r, include = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%"
)
```

# {{ packagename }} 


[![License: MIT](https://img.shields.io/badge/License-MIT-yellow.svg)](https://opensource.org/license/mit)
[![R-CMD-check](https://github.com/{{ gh_repo }}/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/{{ gh_repo }}/actions/workflows/R-CMD-check.yaml)
[![Codecov test coverage](https://codecov.io/gh/{{ gh_repo }}/branch/main/graph/badge.svg)](https://app.codecov.io/gh/{{ gh_repo }}?branch=main)
[![lifecycle-concept](https://raw.githubusercontent.com/reconverse/reconverse.github.io/master/images/badge-concept.svg)](https://www.reconverse.org/lifecycle.html#concept) 


{{ packagename }} provides functions to ....


{{ packagename }} is developed at the [Centre for the Mathematical Modelling of Infectious Diseases](https://www.lshtm.ac.uk/research/centres/centre-mathematical-modelling-infectious-diseases) at the [London School of Hygiene and Tropical Medicine](https://www.lshtm.ac.uk/) as part of [Epiverse-TRACE](https://data.org/initiatives/epiverse/).

## Installation

You can install the development version of {{ packagename }} from
[GitHub](https://github.com/) with:

``` r
# install.packages("pak")
pak::pak("{{ gh_repo }}")
```

## Example

These examples illustrate some of the current functionalities


## Development

### Lifecycle

This package is currently a *concept*, as defined by the [RECON software
lifecycle](https://www.reconverse.org/lifecycle.html). This means that essential
features and mechanisms are still being developed, and the package is not ready
for use outside of the development team.

### Contributions

Contributions are welcome via [pull requests](https://github.com/{{ gh_repo }}/pulls).

### Related projects

This project is related to other existing projects in R or other languages, but also differs from them in the following aspects:


### Code of Conduct

Please note that the {{ packagename }} project is released with a 
[Contributor Code of Conduct](https://github.com/epiverse-trace/.github/blob/main/CODE_OF_CONDUCT.md).
By contributing to this project, you agree to abide by its terms.

Owner

Name: Epiverse-TRACE
Login: epiverse-trace
Kind: organization

Website: https://epiverse.org
Repositories: 17
Profile: https://github.com/epiverse-trace

Citation (CITATION.cff)

# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "epiparameterDashboard" in publications use:'
type: software
license: MIT
title: 'epiparameterDashboard: Explore The Database Of Epidemiological Parameters
  Provided By The epiparameterDashboard And Epireview R Packages'
version: 0.0.0.9000
identifiers:
- type: url
  value: https://epiverse-trace.github.io/epiparameterDashboard/
abstract: Explore The Database Of Epidemiological Parameters Provided By The epiparameterDashboard
  And Epireview R Packages.
authors:
- family-names: Azam
  given-names: James M.
  email: james.azam@lshtm.ac.uk
  orcid: https://orcid.org/0000-0001-5782-7330
- family-names: Lambert
  given-names: Joshua W.
  email: joshua.lambert@lshtm.ac.uk
  orcid: https://orcid.org/0000-0001-5218-3046
repository-code: https://github.com/epiverse-trace/epiparameterDashboard
url: https://github.com/epiverse-trace/epiparameterDashboard/
contact:
- family-names: Azam
  given-names: James M.
  email: james.azam@lshtm.ac.uk
  orcid: https://orcid.org/0000-0001-5782-7330
references:
- type: software
  title: knitr
  abstract: 'knitr: A General-Purpose Package for Dynamic Report Generation in R'
  notes: Suggests
  url: https://yihui.org/knitr/
  repository: https://CRAN.R-project.org/package=knitr
  authors:
  - family-names: Xie
    given-names: Yihui
    email: xie@yihui.name
    orcid: https://orcid.org/0000-0003-0645-5666
  year: '2024'
  doi: 10.32614/CRAN.package.knitr
- type: software
  title: rmarkdown
  abstract: 'rmarkdown: Dynamic Documents for R'
  notes: Suggests
  url: https://pkgs.rstudio.com/rmarkdown/
  repository: https://CRAN.R-project.org/package=rmarkdown
  authors:
  - family-names: Allaire
    given-names: JJ
    email: jj@posit.co
  - family-names: Xie
    given-names: Yihui
    email: xie@yihui.name
    orcid: https://orcid.org/0000-0003-0645-5666
  - family-names: Dervieux
    given-names: Christophe
    email: cderv@posit.co
    orcid: https://orcid.org/0000-0003-4474-2498
  - family-names: McPherson
    given-names: Jonathan
    email: jonathan@posit.co
  - family-names: Luraschi
    given-names: Javier
  - family-names: Ushey
    given-names: Kevin
    email: kevin@posit.co
  - family-names: Atkins
    given-names: Aron
    email: aron@posit.co
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  - family-names: Cheng
    given-names: Joe
    email: joe@posit.co
  - family-names: Chang
    given-names: Winston
    email: winston@posit.co
  - family-names: Iannone
    given-names: Richard
    email: rich@posit.co
    orcid: https://orcid.org/0000-0003-3925-190X
  year: '2024'
  doi: 10.32614/CRAN.package.rmarkdown
- type: software
  title: spelling
  abstract: 'spelling: Tools for Spell Checking in R'
  notes: Suggests
  url: https://ropensci.r-universe.dev/spelling
  repository: https://CRAN.R-project.org/package=spelling
  authors:
  - family-names: Ooms
    given-names: Jeroen
    email: jeroenooms@gmail.com
    orcid: https://orcid.org/0000-0002-4035-0289
  - family-names: Hester
    given-names: Jim
    email: james.hester@rstudio.com
  year: '2024'
  doi: 10.32614/CRAN.package.spelling
- type: software
  title: testthat
  abstract: 'testthat: Unit Testing for R'
  notes: Suggests
  url: https://testthat.r-lib.org
  repository: https://CRAN.R-project.org/package=testthat
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  year: '2024'
  doi: 10.32614/CRAN.package.testthat
  version: '>= 3.0.0'

GitHub Events

Total

Delete event: 5
Push event: 6
Pull request review comment event: 2
Pull request review event: 3
Pull request event: 12
Create event: 6

Last Year

Delete event: 5
Push event: 6
Pull request review comment event: 2
Pull request review event: 3
Pull request event: 12
Create event: 6

Committers

Last synced: about 1 year ago

All Time

Total Commits: 36
Total Committers: 4
Avg Commits per committer: 9.0
Development Distribution Score (DDS): 0.333

Past Year

Commits: 36
Committers: 4
Avg Commits per committer: 9.0
Development Distribution Score (DDS): 0.333

Top Committers

Name	Email	Commits
jamesaazam	j**m@l**k	24
dependabot[bot]	4****]	7
GitHub Action	a**n@g**m	3
github-actions	g**s@g**m	2

Committer Domains (Top 20 + Academic)

github.com: 2 lshtm.ac.uk: 1

Issues and Pull Requests

Last synced: 7 months ago

All Time

Total issues: 1
Total pull requests: 18
Average time to close issues: N/A
Average time to close pull requests: 7 days
Total issue authors: 1
Total pull request authors: 3
Average comments per issue: 0.0
Average comments per pull request: 0.06
Merged pull requests: 12
Bot issues: 0
Bot pull requests: 15

Past Year

Issues: 0
Pull requests: 12
Average time to close issues: N/A
Average time to close pull requests: 2 days
Issue authors: 0
Pull request authors: 2
Average comments per issue: 0
Average comments per pull request: 0.0
Merged pull requests: 8
Bot issues: 0
Bot pull requests: 12

View more stats

Top Authors

Issue Authors

jamesmbaazam (1)

Pull Request Authors

dependabot[bot] (17)
github-actions[bot] (7)
jamesmbaazam (6)

Top Labels

Issue Labels

Pull Request Labels

dependencies (17)

Dependencies

.github/workflows/R-CMD-check.yaml actions

actions/checkout v4 composite
r-lib/actions/check-r-package v2 composite
r-lib/actions/setup-pandoc v2 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

.github/workflows/dependency-change.yaml actions

r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

.github/workflows/lint-changed-files.yaml actions

actions/checkout v4 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

.github/workflows/pkgdown.yaml actions

JamesIves/github-pages-deploy-action v4.6.1 composite
actions/checkout v4 composite
r-lib/actions/setup-pandoc v2 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite
untitaker/hyperlink 0.1.32 composite

.github/workflows/render_readme.yml actions

actions/checkout v4 composite
r-lib/actions/setup-pandoc v2 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

.github/workflows/test-coverage.yaml actions

actions/checkout v4 composite
actions/upload-artifact v4 composite
codecov/codecov-action v4 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

.github/workflows/update-citation-cff.yaml actions

actions/checkout v4 composite
peter-evans/create-pull-request v6 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

.github/workflows/update-copyright-year.yml actions

FantasticFiasco/action-update-license-year v3 composite
actions/checkout v4 composite

DESCRIPTION cran

knitr * suggests
rmarkdown * suggests
spelling * suggests
testthat >= 3.0.0 suggests

ecosyste.ms

Data

Tools

Indexes

Applications

Experiments

Open Source Science

epiparameterdashboard

Science Score: 54.0%

Keywords from Contributors

Repository

Basic Info

Statistics

Metadata Files

README.Rmd

Owner

Citation (CITATION.cff)

GitHub Events

Total

Last Year

Committers

All Time

Past Year

Top Committers

Committer Domains (Top 20 + Academic)

Issues and Pull Requests

All Time

Past Year

Top Authors

Issue Authors

Pull Request Authors

Top Labels

Issue Labels

Pull Request Labels

Dependencies