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srmct-vem

https://github.com/minyuchan-vem/srmct-vem

Science Score: 67.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
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    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 2 DOI reference(s) in README
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    Academic publication links
    Links to: zenodo.org
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    Academic email domains
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    Institutional organization owner
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    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (3.9%) to scientific vocabulary
Last synced: 8 months ago · JSON representation ·

Repository

Basic Info
  • Host: GitHub
  • Owner: MinyuChan-vem
  • Language: Jupyter Notebook
  • Default Branch: main
  • Size: 4.54 MB
Statistics
  • Stars: 0
  • Watchers: 1
  • Forks: 0
  • Open Issues: 0
  • Releases: 1
Created 12 months ago · Last pushed 10 months ago
Metadata Files
Readme Citation

README.md

SRmCT-vEM

This is a repository for SR-mCT and FIBSEM image data files and .ipynb files for tensor-based morphometric analyses, as well as other tomogram processing notebooks (reproduced based on ANSTO Australian Synchrotron MCT Beamline).

DOI

Citation: Chan,M., Korneev,D., Gorelick,S., Ogawa,S., Ramm,G. Characterizing the Fasciculus Retroflexus in Developing Zebrafish using a Correlative Multimodal Volume Imaging Approach. 2025. [Unpublished Work]

Please email minyu.chan@monash.edu for more information on this repo.

Owner

  • Name: Minyu Chan
  • Login: MinyuChan-vem
  • Kind: user

I'm a PhD candidate specializing in correlative synchrotron microCT and volume FIBSEM. My work focuses on 3D images, UNet model training, and segmentation.

Citation (CITATION.cff) 

cff-version: 1.2.0
title: "Characterizing the Fasciculus Retroflexus in Developing Zebrafish using a Correlative Multimodal Volume Imaging Approach"
message: "If you use this software, please cite it as below."
authors:
  - family-names: Chan
    given-names: Minyu
    affiliation: "Monash University"
    orcid: "https://orcid.org/0000-0001-8637-3155"
date-released: 2025-05-24
version: 0.1.0
doi: 10.5281/zenodo.15501471

GitHub Events

Total
  • Release event: 1
  • Public event: 1
  • Push event: 9
  • Pull request event: 1
  • Create event: 4
Last Year
  • Release event: 1
  • Public event: 1
  • Push event: 9
  • Pull request event: 1
  • Create event: 4