Releases | Open Source Science

PlantBiophysics v0.16.2

What's Changed

Adding the model of Tuzet et al. (2003) for stomatal conductance
Adding PPSystem CIRAS-4 file IO
Better tests for file IO by @VEZY in https://github.com/VEZY/PlantBiophysics.jl/pull/73
Files io -> fix issues in ciras by @VEZY in https://github.com/VEZY/PlantBiophysics.jl/pull/74

Full Changelog: https://github.com/VEZY/PlantBiophysics.jl/compare/v0.16.1...v0.16.2

Merged pull requests: - Better tests for file IO (#73) (@VEZY) - Files io -> fix issues in ciras (#74) (@VEZY)

Closed issues: - Review functions to read Walz and LiCOR files (#38) - Add file IO for PPSystems CIRAS-4 (#71) - Add tests for IO (#72)

- Julia
Published by github-actions[bot] 8 months ago

PlantBiophysics v0.16.1

Diff since v0.16.0

Add model of Tuzet et al. (2003)

- Julia
Published by github-actions[bot] 8 months ago

PlantBiophysics v0.16.0

Diff since v0.15.0

Breaking changes

using PlantGeom v0.13.0

Other changes

Add new functions to read files from LI-COR 6800 and from an ESS-DIVE formatted file.

Full Changelog: https://github.com/VEZY/PlantBiophysics.jl/compare/v0.15.0...v0.16.0

- Julia
Published by github-actions[bot] 8 months ago

PlantBiophysics v0.15.0

Diff since v0.14.1

Breaking changes

CompatHelper: bump compat for PlantSimEngine to 0.13, (keep existing compat) by @github-actions in https://github.com/VEZY/PlantBiophysics.jl/pull/67

Full Changelog: https://github.com/VEZY/PlantBiophysics.jl/compare/v0.14.1...v0.15.0

Here's the changelog for the latest release of PlantSimEngine.jl that helps explain the breaking changes:

PRs:

Multiscale outputs struct rework by @Samuel-amap in https://github.com/VirtualPlantLab/PlantSimEngine.jl/pull/134
Dev by @Samuel-amap in https://github.com/VirtualPlantLab/PlantSimEngine.jl/pull/137

Summary: The outputs are now stored differently during the simulation for better performance. You now need to call convert_outputs on the outputs of the simulation, e.g. if the simulation outputs are stored outputs_sim:

julia df_dict = convert_outputs(outputs_sim, DataFrame)

df_dict will be a dictionary of dataframes, with the scale as the key and the results for this scale as the value.

Full Changelog: https://github.com/VirtualPlantLab/PlantSimEngine.jl/compare/v0.12.0...v0.13.0

Merged pull requests: - Multiscale outputs struct rework (#134) (@Samuel-amap) - Dev (#137) (@Samuel-amap)

Closed issues: - ModelList -> better manage models that takes values from the previous time-step (#85) - BoundsError with a single model and several Weather timesteps (#86) - XPalm Github action for testing (#90) - Non-obvious Julia errors (#92) - Documentation improvements (#93) - Collapse similar codepaths, and create a mapping for single-scale simulations (#101) - No outputs when simulating a mapping with one meteo timestep (#105) - Multiscale : outputs not saved when dependency graph only has one depth level (#111)

Merged pull requests: - Fix test-mtg, broken by output structure changes (#65) (@Samuel-amap) - CompatHelper: bump compat for PlantSimEngine to 0.13, (keep existing compat) (#67) (@github-actions[bot])

Closed issues: - Adjust benchmark to more recent changes (#63)

- Julia
Published by github-actions[bot] 9 months ago

PlantBiophysics - v0.14.1

PlantBiophysics v0.14.1

Diff since v0.14.0

Merged pull requests: - Adjust tests to the PR that filters outputs (#64) (@Samuel-amap)

- Julia
Published by github-actions[bot] 12 months ago

PlantBiophysics - v0.14.0

PlantBiophysics v0.14.0

Diff since v0.13.0

Merged pull requests: - CompatHelper: bump compat for PlantSimEngine to 0.11, (keep existing compat) (#61) (@github-actions[bot])

- Julia
Published by github-actions[bot] over 1 year ago

PlantBiophysics - v0.13.0

PlantBiophysics v0.13.0

Diff since v0.12.0

What's Changed

Use value of alpha from Von Caemmerer (2009) in FcVB by @VEZY in https://github.com/VEZY/PlantBiophysics.jl/pull/60
Fix issue in aPPFD value when importing Walz and LiCOR files
Use Fvcb as the only source for parameters defaults values in FvcbIter and FvcbRaw
Fix documentation examples

Full Changelog: https://github.com/VEZY/PlantBiophysics.jl/compare/v0.12.0...v0.13.0

Merged pull requests: - Use value of alpha from Von Caemmerer (2009) in FcVB (#60) (@VEZY)

- Julia
Published by github-actions[bot] over 1 year ago

PlantBiophysics - v0.12.0

PlantBiophysics v0.12.0

Diff since v0.11.0

- Julia
Published by github-actions[bot] over 1 year ago

PlantBiophysics - v0.11.0

PlantBiophysics v0.11.0

Diff since v0.10.0

Merged pull requests: - CompatHelper: bump compat for PlantSimEngine to 0.8, (keep existing compat) (#47) (@github-actions[bot]) - add "Tips in case of error" section (#48) (@SimonTreillou) - Add PlantSimEngine compatibilities (#56) (@bspanoghe) - CompatHelper: bump compat for LsqFit to 0.15, (keep existing compat) (#58) (@github-actions[bot])

Closed issues: - Update doc with new PlantGeom features (#42) - Dl is imported in Pa/kPa, change to kPa (#49) - update aPPFD into PPFD (#52) - Bump PlantSimEngine compat (#55)

- Julia
Published by github-actions[bot] almost 2 years ago

PlantBiophysics - v0.10.0

PlantBiophysics v0.10.0

Diff since v0.9.2

Closed issues: - Add dependency traits from PlantSimEngine to models (#45)

Merged pull requests: - CompatHelper: bump compat for PlantMeteo to 0.6, (keep existing compat) (#44) (@github-actions[bot])

- Julia
Published by github-actions[bot] almost 3 years ago

PlantBiophysics - v0.9.2

PlantBiophysics v0.9.2

Diff since v0.9.1

- Julia
Published by github-actions[bot] about 3 years ago

PlantBiophysics - v0.9.1

PlantBiophysics v0.9.1

Diff since v0.9.0

- Julia
Published by github-actions[bot] about 3 years ago

PlantBiophysics - v0.9.0

PlantBiophysics v0.9.0

Diff since v0.8.0

Merged pull requests: - CompatHelper: bump compat for PlantMeteo to 0.3, (keep existing compat) (#40) (@github-actions[bot])

- Julia
Published by github-actions[bot] about 3 years ago

PlantBiophysics - v0.8.0

PlantBiophysics v0.8.0

Diff since v0.7.0

Merged pull requests: - CompatHelper: bump compat for PlantSimEngine to 0.3, (keep existing compat) (#35) (@github-actions[bot])

- Julia
Published by github-actions[bot] about 3 years ago

PlantBiophysics - v0.7.0

What's Changed

CompatHelper: bump compat for PlantSimEngine to 0.2, (keep existing compat) by @github-actions in https://github.com/VEZY/PlantBiophysics.jl/pull/33
CompatHelper: bump compat for PlantMeteo to 0.2, (keep existing compat) by @github-actions in https://github.com/VEZY/PlantBiophysics.jl/pull/34

Full Changelog: https://github.com/VEZY/PlantBiophysics.jl/compare/v0.6.0...v0.7.0

- Julia
Published by VEZY about 3 years ago

PlantBiophysics - v0.6.0

PlantBiophysics v0.6.0

Diff since v0.5.0

Merged pull requests: - CompatHelper: add new compat entry for Tables at version 1, (keep existing compat) (#30) (@github-actions[bot]) - CompatHelper: bump compat for MultiScaleTreeGraph to 0.8, (keep existing compat) (#32) (@github-actions[bot])