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de-aop-23

Data & R code for the paper: "Apnea of Prematurity induces short and long-term development-related transcriptional changes in the murine cerebellum"

https://github.com/ma-riviere/de-aop-23

Science Score: 49.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 4 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: researchgate.net, zenodo.org
  • ○
    Committers with academic emails
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    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (13.3%) to scientific vocabulary

Keywords

bioinformatics biology biostatistics neuroscience r
Last synced: 6 months ago · JSON representation

Repository

Data & R code for the paper: "Apnea of Prematurity induces short and long-term development-related transcriptional changes in the murine cerebellum"

Basic Info
Statistics
  • Stars: 0
  • Watchers: 1
  • Forks: 0
  • Open Issues: 0
  • Releases: 3
Topics
bioinformatics biology biostatistics neuroscience r
Created over 2 years ago · Last pushed over 2 years ago
Metadata Files
Readme License Citation

README.md

Apnea of Prematurity and transcriptional cerebellar changes

Main branch

[![License](https://img.shields.io/badge/license-CCBY-blue.svg)](/LICENSE) [![DOI](https://zenodo.org/badge/665567093.svg)](https://zenodo.org/badge/latestdoi/665567093) Link to the documentation

Note
This repository contains the data and R code for the "Apnea of Prematurity induces short and long-term development-related transcriptional changes in the murine cerebellum" paper

Requirements:

  • R version 4.3 or newer
  • R Studio version 2022.07 or newer

Repository structure:

  • DE-AoP-23.RProj: R Studio project (open this first).
  • analysis: R Markdown files for the data analysis, split by data type (PCR & IHC).
    • The first code chunk of any of the .Rmd files will install and load all the packages required for the project, based on the renv.lock file.
  • data: The PCR and IHC data, both raw and processed (when applicable).
  • src: R scripts declaring the functions called within the analysis files (e.g. viz.R for the figures, data.R for the data loading).
  • _configs.yml: Lists the paths to various external files used within the code (e.g. data).
  • _dependencies.yml: Lists the packages required for this project (which will be auto-installed based on the existing renv.lock file).

Licence:

CC-BY

Citation:

  • Paper: Rodriguez-Duboc, A., Basille-Dugay, M., Debonne, A., Rivire, M.-A., Vaudry, D., & Burel, D. (2023). Apnea of prematurity induces short and long-term development-related transcriptional changes in the murine cerebellum. Current Research in Neurobiology, 5, 100113. https://doi.org/10.1016/j.crneur.2023.100113

  • Code: Marc-Aurle Rivire, & Agalic Rodriguez-Duboc. (2023). ma-riviere/DE-AoP-23: public release (v1.0). Zenodo. https://doi.org/10.5281/zenodo.8139284

Contributors:

  • Marc-Aurle Rivire:
    ORCID Research Gate

  • Agalic Rodriguez-Duboc:
    ORCID Research Gate

Contact:

For any questions, please contact the primary author of the paper, Agalic Rodriguez-Duboc:
Gmail

Owner

  • Name: Marc-Aurèle Rivière
  • Login: ma-riviere
  • Kind: user
  • Location: Trondheim, Norway
  • Company: DATA CHAMP'

Data Science | R | Behavioral Research

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Last synced: about 2 years ago

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  • Commits: 11
  • Committers: 2
  • Avg Commits per committer: 5.5
  • Development Distribution Score (DDS): 0.273
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