Releases | Open Source Science

SciMLSensitivity - v7.89.0

SciMLSensitivity v7.89.0

Merged pull requests: - Re-enable EnzymeAdjoint testing (#1232) (@ChrisRackauckas) - feat: add Gauss Kronrod Adjoint (#1235) (@maxesit) - Use explicit imports (#1240) (@ChrisRackauckas) - Setup explicit imports in the code (#1241) (@ChrisRackauckas) - Remove printing while running tests (#1245) (@DhairyaLGandhi) - Add spell checking configuration (#1252) (@ChrisRackauckas) - Add typos configuration and fix spelling error (#1253) (@ChrisRackauckas) - Add downgrade CI workflow with Core1 test group (#1254) (@ChrisRackauckas) - Update CI to test on Julia 1, lts, and pre versions (#1255) (@ChrisRackauckas) - Apply JuliaFormatter to fix code formatting (#1256) (@ChrisRackauckas) - Initialize line split fixes following Catalyst.jl PR #1306 (#1258) (@ChrisRackauckas) - Update forwarddiffsensitivitysparsitycomponents.jl to not have jac_prototype (#1263) (@ChrisRackauckas)

- Julia
Published by github-actions[bot] 10 months ago

SciMLSensitivity - v7.88.0

SciMLSensitivity v7.88.0

Diff since v7.87.1

Merged pull requests: - test: fix parameter initialization test (#1237) (@AayushSabharwal)

- Julia
Published by github-actions[bot] 11 months ago

SciMLSensitivity - v7.87.1

SciMLSensitivity v7.87.1

Diff since v7.87.0

Merged pull requests: - Update chaotic_ode.md (#1231) (@ChrisRackauckas) - Update Mooncake error throw derivatives (#1234) (@ChrisRackauckas) - Improve SciMLStructures support (#1236) (@ChrisRackauckas)

Closed issues: - Forward differentiation with Enzyme doesn't work (#1226) - Mooncake gives the wrong aggregator and thus does not give contextualized error messages (#1230)

- Julia
Published by github-actions[bot] 11 months ago

SciMLSensitivity - v7.87.0

SciMLSensitivity v7.87.0

Diff since v7.86.1

Merged pull requests: - Add EnzymeAdjoint (#1209) (@ChrisRackauckas) - Add MooncakeAdjoint (#1227) (@ChrisRackauckas) - Fix tests on master and separate MTK (#1229) (@ChrisRackauckas)

Closed issues: - Grandient calculation fails when using a parameter-dependent SciMLOperator (#1139) - EnzymeAdjoint (#1148)

- Julia
Published by github-actions[bot] 11 months ago

SciMLSensitivity - v7.86.1

SciMLSensitivity v7.86.1

Diff since v7.86.0

Merged pull requests: - Use SciMLBase.Void on EnzymeVJP functions (#1222) (@ChrisRackauckas)

- Julia
Published by github-actions[bot] 11 months ago

SciMLSensitivity - v7.86.0

SciMLSensitivity v7.86.0

Diff since v7.85.0

Merged pull requests: - actually add remake_zero (#1221) (@ChrisRackauckas)

Closed issues: - Inconsistent Gradients between ForwardDiff and Zygote, MTK and Manual (#1219)

- Julia
Published by github-actions[bot] 11 months ago

SciMLSensitivity - v7.85.0

SciMLSensitivity v7.85.0

Diff since v7.84.0

Merged pull requests: - Documentation to use UDEs on the Brusselator equation. (#1215) (@sharvmurgai) - SteadyStateAdjoint fix for applying dp twice (#1217) (@jClugstor) - Use remake_zero! (#1220) (@ChrisRackauckas)

Closed issues: - Wrong gradient when using AutoSpecialize and embedding the ODEProblem in a NamedTuple (#1181) - EnzymeVJP slow down due to allocations from repeated make_zero (#1202) - Zygote and ForwardDiff give different results for gradient of NonlinearSolve (#1210)

- Julia
Published by github-actions[bot] 12 months ago

SciMLSensitivity - v7.84.0

SciMLSensitivity v7.84.0

Diff since v7.83.0

Merged pull requests: - Add Mooncake to Alternative AD Frontends (#1151) (@willtebbutt) - Fix GPU tests (#1213) (@ChrisRackauckas) - Try to make doc build more robust (#1214) (@ChrisRackauckas)

- Julia
Published by github-actions[bot] about 1 year ago

SciMLSensitivity - v7.83.0

SciMLSensitivity v7.83.0

Diff since v7.82.0

- Julia
Published by github-actions[bot] about 1 year ago

SciMLSensitivity - v7.82.0

SciMLSensitivity v7.82.0

Diff since v7.81.0

Merged pull requests: - allow enzyme defaults with callbacks (#1204) (@ChrisRackauckas)

- Julia
Published by github-actions[bot] about 1 year ago

SciMLSensitivity - v7.81.0

SciMLSensitivity v7.81.0

Diff since v7.80.0

Merged pull requests: - Fix GaussAdjoint with callbacks (#1060) (@ChrisRackauckas) - Safety make_zero! on repeated Enzyme calls with caches (#1067) (@ChrisRackauckas) - Get docs and tests building again (#1185) (@ChrisRackauckas) - Fix SDE1 v1 tests by bumping tolerance (#1200) (@ChrisRackauckas) - No pre for SciMLSensitivity because Enzyme (#1201) (@ChrisRackauckas) - fix: fix shadowing tests: (#1203) (@DhairyaLGandhi) - Update docs to have checkpointing for GaussAdjoint (#1206) (@prbzrg) - Take derivative at correct spot in SteadyStateAdjoint (#1208) (@jClugstor)

Closed issues: - SteadyStateAdjoint produces wrong derivative for certain large problems (#1207)

- Julia
Published by github-actions[bot] about 1 year ago

SciMLSensitivity - v7.80.0

SciMLSensitivity v7.80.0

Diff since v7.79.0

Merged pull requests: - CompatHelper: bump compat for ForwardDiff to 1, (keep existing compat) (#1178) (@github-actions[bot]) - CompatHelper: bump compat for ForwardDiff to 1 for package docs, (keep existing compat) (#1179) (@github-actions[bot]) - use LazyBufferCache instead of FixedSizeDiffCache (#1191) (@jClugstor) - Remove another literal_getproperty(sol, ::Val{:u}) dispatch (#1196) (@DhairyaLGandhi) - Just remove SciMLOperators (#1199) (@ChrisRackauckas)

- Julia
Published by github-actions[bot] about 1 year ago

SciMLSensitivity - v7.79.0

SciMLSensitivity v7.79.0

Diff since v7.78.0

Merged pull requests: - Add Julia v1 and vpre to tests (#1187) (@ChrisRackauckas) - Trigger tests for julia versions (#1189) (@ChrisRackauckas) - Run CheckInit after Initialization and Fix Core1 tests (#1193) (@DhairyaLGandhi) - CompatHelper: bump compat for SciMLOperators to 0.4, (keep existing compat) (#1195) (@github-actions[bot])

Closed issues: - error with ensemble solves when using Zygote (#1160) - Adjoints don't work with Zygote if we use default alg (#1165) - Wrong gradient when using mul! on a sparse matrix in the ODE function (#1182)

- Julia
Published by github-actions[bot] about 1 year ago

SciMLSensitivity - v7.78.0

SciMLSensitivity v7.78.0

Diff since v7.77.0

Merged pull requests: - Feat: Handle Adjoints through Initialization (#1168) (@DhairyaLGandhi) - Fix dual tag ordering in second order (#1186) (@ChrisRackauckas)

Closed issues: - secondordersensitivity_product example errors (#1184)

- Julia
Published by github-actions[bot] about 1 year ago

SciMLSensitivity - v7.77.0

SciMLSensitivity v7.77.0

Diff since v7.76.0

Merged pull requests: - Update shadowing.jl test (#1183) (@ChrisRackauckas)

- Julia
Published by github-actions[bot] about 1 year ago

SciMLSensitivity - v7.76.0

SciMLSensitivity v7.76.0

Diff since v7.75.0

Merged pull requests: - CompatHelper: bump compat for DataInterpolations to 8 for package docs, (keep existing compat) (#1174) (@github-actions[bot]) - Check new compats (#1175) (@ChrisRackauckas) - Fix last few tests (#1176) (@ChrisRackauckas)

- Julia
Published by github-actions[bot] about 1 year ago

SciMLSensitivity - v7.75.0

SciMLSensitivity v7.75.0

Diff since v7.74.0

Merged pull requests: - Correctly format signatures in docstrings (#1169) (@moble) - vec tmp4 in quadrature adjoint (#1170) (@ChrisRackauckas) - Another vec for Enzyme (#1172) (@ChrisRackauckas)

Closed issues: - Adding a discrete ODE callback makes the differentiation fail (#1171)

- Julia
Published by github-actions[bot] about 1 year ago

SciMLSensitivity - v7.74.0

SciMLSensitivity v7.74.0

Diff since v7.73.0

Merged pull requests: - Use aliasing API for linear alias specification (#1166) (@jClugstor)

Closed issues: - Docs: Parameter Estimation ODE Tutorial Optimisation Step Fails (#1163)

- Julia
Published by github-actions[bot] over 1 year ago

SciMLSensitivity - v7.73.0

SciMLSensitivity v7.73.0

Diff since v7.72.0

Merged pull requests: - CompatHelper: bump compat for Flux to 0.15 for package docs, (keep existing compat) (#1153) (@github-actions[bot]) - CompatHelper: bump compat for Flux to 0.16 for package docs, (keep existing compat) (#1154) (@github-actions[bot]) - CompatHelper: bump compat for Zygote to 0.7, (keep existing compat) (#1155) (@github-actions[bot]) - CompatHelper: bump compat for Zygote to 0.7 for package docs, (keep existing compat) (#1156) (@github-actions[bot]) - CompatHelper: bump compat for DataInterpolations to 7 for package docs, (keep existing compat) (#1158) (@github-actions[bot]) - Test master (#1159) (@ChrisRackauckas) - CompatHelper: bump compat for LinearSolve to 3, (keep existing compat) (#1161) (@github-actions[bot]) - Add NonlinearSolve v4 to test compat (#1164) (@visr)

- Julia
Published by github-actions[bot] over 1 year ago

SciMLSensitivity - v7.72.0

SciMLSensitivity v7.72.0

Diff since v7.71.2

Merged pull requests: - chore: reinstate repack (#1147) (@DhairyaLGandhi) - chore(deps): bump codecov/codecov-action from 4 to 5 (#1150) (@dependabot[bot]) - Mooncake Inside Problems (#1152) (@willtebbutt)

Closed issues: - Zero gradient when using ComplexF64 ComponentArrays as Parameters (#1149)

- Julia
Published by github-actions[bot] over 1 year ago

SciMLSensitivity - v7.71.2

SciMLSensitivity v7.71.2

Diff since v7.71.1

Merged pull requests: - Don't allow picking GaussAdjoint with TrackerVJP in default alg (#1145) (@ChrisRackauckas)

Closed issues: - Default algorithm should have checks for Adjoints limitations (#1116)

- Julia
Published by github-actions[bot] over 1 year ago

SciMLSensitivity - v7.71.1

SciMLSensitivity v7.71.1

Diff since v7.71.0

Merged pull requests: - Fix function grabbing in forward sensitivity remake (#1144) (@ChrisRackauckas)

Closed issues: - remake incorrect for ODEForwardSensitivityProblem on 7.71 (#1143)

- Julia
Published by github-actions[bot] over 1 year ago

SciMLSensitivity - v7.71.0

SciMLSensitivity v7.71.0

Diff since v7.70.0

Merged pull requests: - chore: use tunables in vec_pjac (#1097) (@DhairyaLGandhi) - Avoid needing adjoints of SciMLStructures' constructor (#1135) (@DhairyaLGandhi) - Fix remake of ForwardDiffSensitivity (#1142) (@ChrisRackauckas)

Closed issues: - better error message for 'wrong' tspan inputs (#1137)

- Julia
Published by github-actions[bot] over 1 year ago

SciMLSensitivity - v7.70.0

SciMLSensitivity v7.70.0

Diff since v7.69.0

Merged pull requests: - Update docs remove extra returns from loss and extra args from callback (#1128) (@Vaibhavdixit02) - CompatHelper: bump compat for GPUArraysCore to 0.2, (keep existing compat) (#1134) (@github-actions[bot]) - Set SciMLBase bound (#1138) (@ChrisRackauckas) - CompatHelper: bump compat for Functors to 0.5, (keep existing compat) (#1140) (@github-actions[bot])

- Julia
Published by github-actions[bot] over 1 year ago

SciMLSensitivity - v7.69.0

SciMLSensitivity v7.69.0

Diff since v7.68.0

Merged pull requests: - refactor: cleanup deps and replace SparseDiffTools with SciMLJacobianOperators (#1124) (@avik-pal) - CompatHelper: bump compat for DiffEqCallbacks to 4 for package docs, (keep existing compat) (#1126) (@github-actions[bot]) - CompatHelper: bump compat for DiffEqCallbacks to 4 for package gpu, (keep existing compat) (#1127) (@github-actions[bot])

- Julia
Published by github-actions[bot] over 1 year ago

SciMLSensitivity - v7.68.0

SciMLSensitivity v7.68.0

Diff since v7.67.0

Merged pull requests: - Reflect ODEForwardSensitivityProblem kwarg change in docs (#1112) (@jClugstor) - CompatHelper: bump compat for DiffEqFlux to 4 for package gpu, (keep existing compat) (#1113) (@github-actions[bot]) - CompatHelper: bump compat for Enzyme to 0.13, (keep existing compat) (#1114) (@github-actions[bot]) - CompatHelper: bump compat for Enzyme to 0.13 for package docs, (keep existing compat) (#1115) (@github-actions[bot]) - CompatHelper: bump compat for Optimization to 4 for package docs, (keep existing compat) (#1117) (@github-actions[bot]) - CompatHelper: bump compat for OptimizationOptimisers to 0.3 for package docs, (keep existing compat) (#1118) (@github-actions[bot]) - CompatHelper: bump compat for OptimizationOptimJL to 0.4 for package docs, (keep existing compat) (#1119) (@github-actions[bot]) - CompatHelper: bump compat for OptimizationPolyalgorithms to 0.3 for package docs, (keep existing compat) (#1121) (@github-actions[bot]) - Update Project.toml (#1123) (@ChrisRackauckas)

Closed issues: - Neural SDE example fails on convert(::Type{Float64}, x::Tracker.TrackedReal{Float64}) (#1109)

- Julia
Published by github-actions[bot] over 1 year ago

SciMLSensitivity - v7.67.0

SciMLSensitivity v7.67.0

Diff since v7.66.2

Merged pull requests: - CompatHelper: bump compat for Lux to 1 for package docs, (keep existing compat) (#1108) (@github-actions[bot]) - Split QA tests to a separate group (#1111) (@ChrisRackauckas)

Closed issues: - missing method matching recursive_copyto!(::AbstractVector, ::Tuple) (#1082)

- Julia
Published by github-actions[bot] over 1 year ago

SciMLSensitivity - v7.66.2

SciMLSensitivity v7.66.2

Diff since v7.66.1

Merged pull requests: - Switch positional alg argument to kwarg sensealg for ODEForwardSensitivityProblem (#1106) (@jClugstor)

Closed issues: - Consistency in sensealg arguments (#1088)

- Julia
Published by github-actions[bot] over 1 year ago

SciMLSensitivity - v7.66.1

SciMLSensitivity v7.66.1

Diff since v7.66.0

Merged pull requests: - Add support for using non-AbstractArrays with OrdinaryDiffEq and Zygote (#1092) (@apkille) - Remove Deps: StochasticDiffEq and OrdinaryDiffEq (#1096) (@prbzrg)

Closed issues: - [Deprecation warnings] use Base.getindex(A, :, i) instead. & Change A[i] to A.u[i] (#960) - Depending on OrdinaryDiffEq? (#1095)

- Julia
Published by github-actions[bot] over 1 year ago

SciMLSensitivity - v7.66.0

SciMLSensitivity v7.66.0

Diff since v7.65.0

Merged pull requests: - Fake solver output type to please Enzyme (#1098) (@ChrisRackauckas) - Fix null parameters with ForwardDiffSensitivity (#1104) (@ChrisRackauckas)

- Julia
Published by github-actions[bot] over 1 year ago

SciMLSensitivity - v7.65.0

SciMLSensitivity v7.65.0

Diff since v7.64.0

Merged pull requests: - Check p while choosing default sensealg (#1079) (@DhairyaLGandhi) - Update Forward Mode to use SciMLStructures (#1085) (@DhairyaLGandhi) - CompatHelper: bump compat for DataInterpolations to 6 for package docs, (keep existing compat) (#1086) (@github-actions[bot]) - Remove duplicate callbacks in ForwardDiff and ReverseDiff adjoints (#1087) (@jClugstor)

Closed issues: - Including callback in problem vs solve call changes gradient for ForwardDiffSensitivity (#1081)

- Julia
Published by github-actions[bot] almost 2 years ago

SciMLSensitivity - v7.64.0

SciMLSensitivity v7.64.0

Diff since v7.63.1

Merged pull requests: - add tests for Enzyme frontend for nonlinear problem (#1066) (@m-bossart) - docs: Make example code consistent with text (#1080) (@moble)

- Julia
Published by github-actions[bot] almost 2 years ago

SciMLSensitivity - v7.63.1

SciMLSensitivity v7.63.1

Diff since v7.63.0

Merged pull requests: - Revert breakage in GPU (#1078) (@ChrisRackauckas)

Closed issues: - SciMLSensitivity 7.63 leads to scalar indexing on CUDA (#1077)

- Julia
Published by github-actions[bot] almost 2 years ago

SciMLSensitivity - v7.63.0

SciMLSensitivity v7.63.0

Diff since v7.62.0

Merged pull requests: - fix: fix incorrect usage of getu resulting in flattened arrays (#1076) (@AayushSabharwal)

Closed issues: - GaussAdjoint fails on a problem with discrete callbacks (#1072)

- Julia
Published by github-actions[bot] almost 2 years ago

SciMLSensitivity - v7.62.0

SciMLSensitivity v7.62.0

Diff since v7.61.1

Merged pull requests: - Use the SciMLStructures Tunable interface (#1010) (@ChrisRackauckas) - Update to using SII and SciMLStructures (#1057) (@DhairyaLGandhi)

Closed issues: - Julia crashes when trying to optimize Graph NODE (#1070)

- Julia
Published by github-actions[bot] almost 2 years ago

SciMLSensitivity - v7.61.1

SciMLSensitivity v7.61.1

Diff since v7.61.0

Merged pull requests: - Hotfix GaussAdjoint enzyme on non-vector (#1069) (@ChrisRackauckas)

- Julia
Published by github-actions[bot] almost 2 years ago

SciMLSensitivity - v7.61.0

SciMLSensitivity v7.61.0

Diff since v7.60.1

Merged pull requests: - Update default ODE solver tests to use new OrdinaryDiffEq infrastructure (#1063) (@ChrisRackauckas) - Do not require gradient for vjp choice (#1064) (@ChrisRackauckas) - Properly zero memory (#1065) (@ChrisRackauckas)

Closed issues: - BoundsError for polyalgorithm (#1035)

- Julia
Published by github-actions[bot] almost 2 years ago

SciMLSensitivity - v7.60.1

SciMLSensitivity v7.60.1

Diff since v7.60.0

Merged pull requests: - Fence definition of literal_getproperty adjoint (#1059) (@DhairyaLGandhi)

Closed issues: - precompile fails with v7.60.0 (#1058)

- Julia
Published by github-actions[bot] about 2 years ago

SciMLSensitivity - v7.60.0

SciMLSensitivity v7.60.0

Diff since v7.59.0

Merged pull requests: - chore: move literal_getproperty adjoint to SciMLSensitivity (#1056) (@DhairyaLGandhi)

- Julia
Published by github-actions[bot] about 2 years ago

SciMLSensitivity - v7.59.0

SciMLSensitivity v7.59.0

Diff since v7.58.0

Merged pull requests: - Fix doc build for Optimization updates (#1052) (@ChrisRackauckas) - Fully zero all memory in QuadratureAdjoint (#1053) (@ChrisRackauckas) - CompatHelper: bump compat for OptimizationOptimJL to 0.3 for package docs, (keep existing compat) (#1054) (@github-actions[bot]) - Test if doc build succeeds now? (#1055) (@ChrisRackauckas)

- Julia
Published by github-actions[bot] about 2 years ago

SciMLSensitivity - v7.58.0

SciMLSensitivity v7.58.0

Diff since v7.57.0

Merged pull requests: - use GaussAdjoint in automatic sensealg (#993) (@ArnoStrouwen) - Fix Array of Structs to Struct of Array in ReverseDiff (#1026) (@ChrisRackauckas) - fix some deprecations (#1047) (@ArnoStrouwen)

Closed issues: - ReverseDiffAdjoint fails on implicit solvers (#581)

- Julia
Published by github-actions[bot] about 2 years ago

SciMLSensitivity - v7.57.0

SciMLSensitivity v7.57.0

Diff since v7.56.2

Merged pull requests: - fix sign mistake in direct sensitivity tutorial (#1038) (@ArnoStrouwen) - Bump julia-actions/setup-julia from 1 to 2 (#1039) (@dependabot[bot]) - CompatHelper: bump compat for DataInterpolations to 5 for package docs, (keep existing compat) (#1045) (@github-actions[bot]) - Revert no enzyme on Windows (#1046) (@ChrisRackauckas) - Fix tests (#1050) (@ChrisRackauckas)

Closed issues: - Adjoints for LinearSolve (#832) - Split off core API and functionality into a SciMLSensitivityCore package (#1036) - Package SciMLSensitivity errored during testing (received signal: KILL) (#1041)

- Julia
Published by github-actions[bot] about 2 years ago

SciMLSensitivity - v7.56.2

SciMLSensitivity v7.56.2

Diff since v7.56.1

Merged pull requests: - Fix default algorithm adjoint (#1031) (@ChrisRackauckas) - Fix Test Failures (#1033) (@avik-pal)

Closed issues: - Zygote gradient does not agree with finite difference (#1000) - ERROR: LoadError: MethodError: no method matching forwarddiffsmodeltime(::Nothing) (#1027)

- Julia
Published by github-actions[bot] about 2 years ago

SciMLSensitivity - v7.56.1

SciMLSensitivity v7.56.1

Diff since v7.56.0

Merged pull requests: - Bump codecov/codecov-action from 3 to 4 (#1005) (@dependabot[bot]) - reapply formatter (#1020) (@ArnoStrouwen) - Enzyme2 (#1021) (@ArnoStrouwen) - Enzyme not compatible with ReverseDiffAdjoint and TrackerAdjoint (#1022) (@ArnoStrouwen) - add more info to AD backend failures (#1023) (@ArnoStrouwen) - Split leaky testset into separate group (#1024) (@ArnoStrouwen) - Fix Gauss integrand sign change for DiffEqCallbacks change (#1030) (@ChrisRackauckas)

Closed issues: - Lux branching (#997)

- Julia
Published by github-actions[bot] about 2 years ago

SciMLSensitivity - v7.56.0

SciMLSensitivity v7.56.0

Diff since v7.55.0

Merged pull requests: - fix EnzymeVJP in automaticsensealgchoice (#1004) (@ArnoStrouwen) - Bump crate-ci/typos from 1.17.2 to 1.18.1 (#1006) (@dependabot[bot]) - [skip ci] Update dependabot.yml (#1007) (@ArnoStrouwen) - Tutorial with no sensealg and no Enzyme bitcode replacement (#1014) (@ArnoStrouwen) - CompatHelper: add new compat entry for Enzyme at version 0.11 for package docs, (keep existing compat) (#1015) (@github-actions[bot]) - CompatHelper: bump compat for DiffEqCallbacks to 3, (keep existing compat) (#1017) (@github-actions[bot]) - CompatHelper: bump compat for DiffEqCallbacks to 3 for package docs, (keep existing compat) (#1018) (@github-actions[bot]) - CompatHelper: bump compat for DiffEqCallbacks to 3 for package gpu, (keep existing compat) (#1019) (@github-actions[bot])

Closed issues: - Failure to deploy docs (#990)

- Julia
Published by github-actions[bot] over 2 years ago

SciMLSensitivity - v7.55.0

SciMLSensitivity v7.55.0

Diff since v7.53.0

Merged pull requests: - wrap safetestsets into testset per GROUP (#986) (@ArnoStrouwen) - ci(buildkite): rotate encrypted SECRET_DOCUMENTER_KEY (#998) (@thazhemadam) - fix regression in second order adjoint example (#999) (@ArnoStrouwen) - ci: rename DOCUMENTER_KEY to TAGBOT_KEY (#1003) (@thazhemadam)

- Julia
Published by github-actions[bot] over 2 years ago

SciMLSensitivity - v7.53.0

SciMLSensitivity v7.53.0

Diff since v7.52.0

Merged pull requests: - typos CI (#981) (@ArnoStrouwen) - Bump actions/checkout from 3 to 4 (#983) (@dependabot[bot]) - Bump crate-ci/typos from 1.16.23 to 1.17.2 (#984) (@dependabot[bot]) - Bump actions/cache from 3 to 4 (#985) (@dependabot[bot]) - fix documentation examples (#987) (@ArnoStrouwen) - CompatHelper: add new compat entry for OptimizationFlux at version 0.2 for package docs, (keep existing compat) (#988) (@github-actions[bot]) - CompatHelper: add new compat entry for StaticArrays at version 1 for package docs, (keep existing compat) (#989) (@github-actions[bot])

- Julia
Published by github-actions[bot] over 2 years ago

SciMLSensitivity - v7.52.0

SciMLSensitivity v7.52.0

Diff since v7.47.0

Merged pull requests: - chore: bump RecursiveArrayTools compat (#930) (@AayushSabharwal) - Remove undefined exports (#937) (@avik-pal) - Remove dropped kwargs from DynamicSS (#941) (@avik-pal) - Number strategies consistently (#946) (@moble) - End of Year Housekeeping (#948) (@avik-pal) - CompatHelper: bump compat for RecursiveArrayTools to 3 for package docs, (keep existing compat) (#950) (@github-actions[bot]) - CompatHelper: add new compat entry for DelayDiffEq at version 5 for package docs, (keep existing compat) (#952) (@github-actions[bot]) - CompatHelper: add new compat entry for DelimitedFiles at version 1 for package docs, (keep existing compat) (#953) (@github-actions[bot]) - CompatHelper: add new compat entry for LuxCUDA at version 0.3 for package docs, (keep existing compat) (#954) (@github-actions[bot]) - Handle non-vectors properly (#956) (@avik-pal) - CompatHelper: bump compat for Adapt to 4, (keep existing compat) (#957) (@github-actions[bot]) - Added tests to prevent future issue #942 (#958) (@ThummeTo) - Make ReverseDiffAdjoint return ODE solutions (#961) (@ChrisRackauckas) - pass shadow closure incase f is a closure (#962) (@ArbitRandomUser) - v1.10 and RAT v3 (#965) (@ChrisRackauckas) - Fix finitediff complex adjoints (#967) (@ChrisRackauckas) - Try fixing the 2nd callback test set (#971) (@ChrisRackauckas) - A few small master fixes (#972) (@ChrisRackauckas)

Closed issues: - SteadyStateAdjointProblem and Conv: Slow fallback implementation invoked for conv! (#473) - adjointsensitivities and CVODEBDF crashes for medium sized stiff ODE model (#795) - ReverseDiffAdjoint not working with losses that call sol.u (#894) - autojacvec = true produces error with adjoint_sensitivities() (#896) - Error with complex numbers (#938) - ReverseDiff leads to wrong sensitivities over ODESolution (#942) - ReverseDiffAdjoint is failing (for simple example) on implicit solver (#943)

- Julia
Published by github-actions[bot] over 2 years ago

SciMLSensitivity -

- Julia
Published by ChrisRackauckas over 2 years ago

SciMLSensitivity -

- Julia
Published by ChrisRackauckas over 2 years ago

SciMLSensitivity -

- Julia
Published by ChrisRackauckas almost 3 years ago

SciMLSensitivity -

- Julia
Published by ChrisRackauckas about 3 years ago

SciMLSensitivity -

- Julia
Published by ChrisRackauckas about 3 years ago

SciMLSensitivity -

- Julia
Published by ChrisRackauckas over 3 years ago

SciMLSensitivity - v7.14.0

SciMLSensitivity v7.14.0

Diff since v7.13.0

Merged pull requests: - Support Enzyme and ReverseDiff with compiled tape for adjoint sensitivity methods with callbacks (#762) (@frankschae) - [skip ci] LanguageTool (#764) (@ArnoStrouwen)

- Julia
Published by github-actions[bot] over 3 years ago

SciMLSensitivity - v7.13.0

SciMLSensitivity v7.13.0

Diff since v7.12.0

Closed issues: - Zygote gradient: ERROR: Enzyme cannot deduce type (#744)

Merged pull requests: - Support ReverseDiffVJP(true) for hybrid DEs (#732) (@frankschae)

- Julia
Published by github-actions[bot] over 3 years ago

SciMLSensitivity - v7.12.0

SciMLSensitivity v7.12.0

Diff since v7.11.1

Closed issues: - QuadratureAdjoint docstring contains nonexistent "compile" kwarg (#752) - sensealg in first example (#754)

Merged pull requests: - Remove extra compile argument from QuadratureAdjoint docstring (#753) (@ChrisRackauckas) - ci(.buildkite): update the encrypted DOCUMENTER_KEY (#756) (@thazhemadam) - Reorganize the SciMLSensitivity documentation (#757) (@ChrisRackauckas) - CompatHelper: add new compat entry for OptimizationNLopt at version 0.1 for package docs, (keep existing compat) (#758) (@github-actions[bot]) - CompatHelper: bump compat for GraphNeuralNetworks to 0.6 for package docs, (keep existing compat) (#759) (@github-actions[bot]) - Vectorize backwardnoise for diagonal SDEs (#761) (@Abhishek-1Bhatt)

- Julia
Published by github-actions[bot] over 3 years ago

SciMLSensitivity - v7.11.1

SciMLSensitivity v7.11.1

Diff since v7.11.0

Closed issues: - Fix terminating callback on InterpolatingAdjoint and QuadratureAdjoint (#485)

Merged pull requests: - Filtering of time steps for ForwardDiffSensitivity with Callbacks (#747) (@frankschae) - reproducible docs (#749) (@ArnoStrouwen) - [skip ci] doc and test compat (#750) (@ArnoStrouwen)

- Julia
Published by github-actions[bot] over 3 years ago

SciMLSensitivity - v7.11.0

SciMLSensitivity v7.11.0

Diff since v7.10.2

Merged pull requests: - ci: use build matrix (#743) (@thazhemadam) - Test master (#745) (@ChrisRackauckas) - canonize docs (#746) (@ArnoStrouwen)

- Julia
Published by github-actions[bot] over 3 years ago

SciMLSensitivity - v7.10.2

SciMLSensitivity v7.10.2

Diff since v7.10.1

Merged pull requests: - Filter sensealg to stop infinite recursion of ReverseDiff -> RD (#742) (@ChrisRackauckas)

- Julia
Published by github-actions[bot] over 3 years ago

SciMLSensitivity - v7.10.1

SciMLSensitivity v7.10.1

Diff since v7.10.0

Closed issues: - Simple SciML case - core dumped after switching from julia 1.7 to 1.8 (#733) - importing SciMLSensitivity on mybinder with julia 1.8.1 kills julia (#734) - Custom rrule not working (#735)

Merged pull requests: - Neural ODE tutorial with SimpleChains.jl (#736) (@Abhishek-1Bhatt) - Update Downstream.yml (#738) (@avik-pal) - Title SEO (#739) (@ArnoStrouwen) - More auto-promotion to FullSpecialization (#741) (@ChrisRackauckas)

- Julia
Published by github-actions[bot] over 3 years ago

SciMLSensitivity - v7.10.0

SciMLSensitivity v7.10.0

Diff since v7.9.0

Merged pull requests: - Fix for non-diagonal, non-square SDEs (#731) (@frankschae)

- Julia
Published by github-actions[bot] over 3 years ago

SciMLSensitivity - v7.9.0

SciMLSensitivity v7.9.0

Diff since v7.8.0

Closed issues: - ReverseDiffVJP errors due to method ambiguity for DAE adjoint (#724)

Merged pull requests: - Move LazyBuffer ReverseDiff dispatch to SciMLSensitivity (#730) (@frankschae)

- Julia
Published by github-actions[bot] over 3 years ago

SciMLSensitivity - v7.8.0

SciMLSensitivity v7.8.0

Diff since v7.7.0

Closed issues: - Re-enable a few docs builds (#673) - Zygote fails when using DAE with mass matrix and sensealg = InterpolatingAdjoint(autojacvec=ZygoteVJP()) (#686)

Merged pull requests: - add more doctests (#710) (@ChrisRackauckas) - Add Invalidations.yml [skip ci] skip tests (@devmotion) - Fix adjoint sensitivity for parameter dependent algebraic constraints (#729) (@YingboMa)

- Julia
Published by github-actions[bot] over 3 years ago

SciMLSensitivity - v7.7.0

SciMLSensitivity v7.7.0

Diff since v7.6.3

Closed issues: - Allow provided jacobians with DAE adjoint (#714) - ForwardDiff tag error when computing Jacobian for DAE adjoint (#718)

Merged pull requests: - Allow custom jacobians with DAE adjoints (#717) (@taylormcd) - fix tag error for fallback case, fixes #718 (#719) (@taylormcd) - to to solve sde_neural segfault (#721) (@ChrisRackauckas) - fix neural stoch test (#722) (@ChrisRackauckas) - Badges (#723) (@ArnoStrouwen) - [skip ci] buildkite name change (#725) (@ArnoStrouwen)

- Julia
Published by github-actions[bot] over 3 years ago