Recent Releases of siibra-explorer
siibra-explorer - Release v2.14.22
v2.14.22
Feature
- added tooltip why log
- (experimental) added toggle to show all meshes
Bugfix
- Improved stability of feature panel and fetching
Behind the scene
- Preparing for Julich Brain Big Brain releases
- Add scripts for deploying on new k8s cluster
- TypeScript
Published by github-actions[bot] 9 months ago
siibra-explorer - Release v2.14.21
v2.14.21
Bugfix
- fix the URL of older versions of explorer incorrectly showing delineation flag
- fix annotation vary header
- TypeScript
Published by github-actions[bot] 10 months ago
siibra-explorer - Release v2.14.20
v2.14.20
Feature
- Show/Hide delineation now persist in state
- (experimental) glass brain
Bugfix
- Fixed some instability of annotation mode.
Behind the scenes
- Clarified authors & contributors
- Improve performance by batching adding & removing layers
- Added text to reflect that annoations will also be shared
- Enabled viewer config in experimental mode
- TypeScript
Published by github-actions[bot] 10 months ago
siibra-explorer - Release v2.14.19
v2.14.19
Bugfix
- Fixed Safari not loading bug
- TypeScript
Published by github-actions[bot] 11 months ago
siibra-explorer - Release v2.14.18
v2.14.18
Bugfix
- Fixed x-overlay-layer nifti, swc
- Fixed
ctrl+cstring copy in viewer - Fixed parcellation visibility toggle
Feature
- Remove dependency on unpkg
- (experimental) keyframe support for nehuba viewer
Behind the scenes
- unify colormap shader generation and access
- do not track perspective images with git-lfs
- TypeScript
Published by github-actions[bot] 11 months ago
siibra-explorer - Release v2.14.17
v2.14.17
Documentation
- added video tutorial on drag and drop nifti
- fixed latest release script
- TypeScript
Published by github-actions[bot] about 1 year ago
siibra-explorer - Release v2.14.16
v2.14.16
Feature
- allow position of substrate to be customized (#1479)
- parse template
meta.jsonendpoint, and use RBG color map when prompted - drag&drop nifti auto clamp & auto set highest value as threshold max
- (experimental): added support to fetch
.dzitransform - (experimental): added support for zarr(2) as data feature
Bugfix
- fix issue where repeated request for saneURL yield unstable behavior
- fix regression where oblique slicing in parcellation with large number of regions causes signficant slow down
Behind the scene
- added prepare release to package.json script
- bump ng-layer-tune version, for inclusion of orange colormap
- use more efficient endpoint to retrieve available maps
- attempt to parse template theme (dark/light) via
meta.json - parses opacity attribute of volumes overlay volumes via
meta.json
- TypeScript
Published by github-actions[bot] about 1 year ago
siibra-explorer - Release v2.14.15
v2.14.15
Feature
- drag/drop nifti: allow sform to be used if qform not set
- support zarr/n5 datasource
- support datasource hosted on GCP (via JSON API)
Documentation
- fixed up some wordings related to drag/drop nifti
Bugfix
- fix the visual bug where full name of the space/parcellation is not been properly displayed
- TypeScript
Published by github-actions[bot] over 1 year ago
siibra-explorer - Release v2.14.14
v2.14.14
Bugfix
- bigbrain download current view now properly parse bounding box
- TypeScript
Published by github-actions[bot] over 1 year ago
siibra-explorer - Release v2.14.13
v2.14.13
Feature
- Added an example of setting up a proxy for access-controlled content
- Added free-mode (access via
?free=true) - Added hint for drag-n-drop nifti file (in helper one pager and quick tour)
- Allow nifti to be added as a labelled volume by using
.label.nii.gzor.label.niiextension
Bugfix
- Fixed layout issues when user drag-n-dropped nifti has irregularities
- Fixed picture-in-picture minimap in maximized axial view
Behind the scene
- Added script to automatically create release metadata files
- TypeScript
Published by github-actions[bot] over 1 year ago
siibra-explorer - Release v2.14.12
v2.14.12
Behind the scenes
- Reverting point assignment panel behaviors
Known regressions
- Labelled assignment now does not work. This will be addressed in a future update. (The temporary regression allows for significant performant statistical assignment, as well more accurate label assignment.)
- TypeScript
Published by github-actions[bot] over 1 year ago
siibra-explorer - Release v2.14.11
v2.14.11
Feature
- (experimental) showing coordinates of all warped spaces
Bugfix
- Fixed inconsistent saneurl creation (Thanks to Sebastian Bludau for reporting this)
Known regressions
- Labelled assignment now does not work. This will be addressed in a future update. (The temporary regression allows for significant performant statistical assignment, as well more accurate label assignment.)
- TypeScript
Published by github-actions[bot] over 1 year ago
siibra-explorer - Release v2.14.10
v2.14.10
Bugfix
- Fix deployment scripts
- Fix region update to updated siibra-api endpoint
Behind the scenes
- Re-enable siibra-api warning mismatch warning
- Adapt to siibra-api v0.3.18 point assignment rhetoric
- Enable cheat code, removing obsolete experimental flags
- If
HOST_PATHNAMEenv is provided, also listens on root path - Added servicemeta endpoint
Known regressions
- Labelled assignment now takes a little longer. Additionally, the assigned value does not match that of the index label. This will be addressed in a future update. (The temporary regression allows for significant performant statistical assignment, as well more accurate label assignment.)
- TypeScript
Published by github-actions[bot] over 1 year ago
siibra-explorer - Release v2.14.8
v2.14.8
Bugfix
- fixed issue of displaying statistical maps
Behind the Scenes
- Minor tweak on e2e screenshots
- TypeScript
Published by github-actions[bot] over 1 year ago
siibra-explorer - Release v2.14.7
v2.14.7
Bugfix
- fixed issue on iOS/Safari volumetric viewer not displaying. (update called before config was populated).
Behind the Scenes
- Minor refactor to remove unneeded code.
- Fixed typos/errors in release notes
- Removed unused tests (e2e)
- Added simple cypress for basic viewer rendering
- TypeScript
Published by github-actions[bot] over 1 year ago
siibra-explorer - Release v2.14.6
v2.14.6
Feature
- (experimental) support
.pointclouddrag-and-drop
Bugfix
- Fixed dependency support for new GCS JSON API
- TypeScript
Published by github-actions[bot] over 1 year ago
siibra-explorer - Release v2.14.5
v2.14.5
Feature
- Add support for compound feature
- Added documentation for URL encoding
- Improved documentation for plugin API
- Reworded point assignment UI
- Allow multi selected region names to be copied
- Added legend to region hierarchy
- Allow latest queried concept in feature view
- Allow experimental flag to be set to be on at runtime (this also shows the button, allow toggling of experimental features)
- Feature: added supported for .annot fsaverage label
- (experimental) Added code snippet to limited panels
- (experimental) allow addition of custom linear coordinate space
- (experimental) show BigBrain slice number
- (experimental) allow big brain template to be downloaded
Bugfix
- Copy of free text (Ctrl + C) now works properly
- Fixes issue where annotation mode was not displaying correctly, after selecting volume of interest
- When saneURL is not found, siibra-explorer will not correctly redirects to default app, and show the error message
Behind the Scenes
- Removed dependency on connectivity-component
- Removed reference to JSC OKD instance, as the instance is no longer available
- Updated google-site-verification
- Allow inter-space transform to be configured at runtime
- Fetch
/meta.jsonfor additional metadata related to a volume
- TypeScript
Published by github-actions[bot] over 1 year ago
siibra-explorer - Release v2.14.4
v2.14.4
Feature
- Sagittal view of perspective PiP changes hemisphere when user navigates to the otehr hemisphere
- Adds an additional degree adjustment to perspective PiP
- Encode maximised panel state
Behind the Scenes
- Fix CI/CD deploy on rancher
- Update API docs
- Update github action checkout/setupnode
- TypeScript
Published by github-actions[bot] over 2 years ago
siibra-explorer - Release v2.14.3
v2.14.3
Bugfixes
- Fixed minor theme issue.
- Fixed issue with drag/drop nifti with multiple dimensions.
- Fixed showing user dropped nifti filename.
- Fix Safari 17 nehuba issue
Behind the Scenes
- Added loading progress bar when plotly is loading.
- Restored displaying warnings to user dragged volume.
- Fine tune helm deploy scripts
- TypeScript
Published by github-actions[bot] over 2 years ago
siibra-explorer - Release v2.14.2
v2.14.2
Features
- Allow users to self define values previously set by range input (upgraded ng-layer-tune to 0.23)
- Allow nutil quantifier with multiple items to be displayed
- Added snackbar feedback when error is encountered when drag/drop files
Bugfixes
- Added reference to Julich Brain 3.1
- Fixed unsupported parcellations
- Fixed navigation to ICBM152/JulichBrain3.1 on startup
- Fixed siibra-api endpoint definition
- Added feedback when fetch feature encounters error
Behind the Scenes
- Updated CI/CD pipelines
- Removed unused pipes
- Removed unused display function in connectivity component
- TypeScript
Published by github-actions[bot] over 2 years ago
siibra-explorer - Release v2.14.1
v2.4.1
Bugfixes
- fixed PLI best view point
- fixed font size of section header under feature
- temporarily fixed nehuba navigation panel
Under the hood stuff
- updated backend requirements, removed unused environment variable definitions
- added k8s deployment config
- updated docs
- TypeScript
Published by github-actions[bot] over 2 years ago
siibra-explorer - Release v2.14.0
v2.14.0
Feature
- added
[p]and[n]as keyboard shortcut to navigate previous/next slice - show template and parcellation info even if the chip are hidden
- added button to directly copy navigation coordinate
- experimental support for other versions of regions
- experimental support for drag/drop pointcloud
.jsonfiles - experimental support for
deepzoom://source format - quick search now show branches in addition to leaves
- added context in region hierarchy view
- added coordinate entry dialog
- switching templates will now fallback to use the newest parcellation in the same series
Bugfix
- fixed keyframe mode not activating on second attempt
- on selecting a new point while point assignment is minimized, will maximize the point assignment panel
Behind the scenes
- minor refactoring
- update to Angular 15
- migrated to Angular material 15
- filter region now runs on worker thread. This should speed up region filter responsiveness
- quick search now show all results, rather than the first four
- TypeScript
Published by github-actions[bot] over 2 years ago
siibra-explorer - Release v2.13.5
v2.13.5
Bugfix
- Fix saneurl generation. Logged in user can generate long lived saneurls again
- TypeScript
Published by github-actions[bot] over 2 years ago
siibra-explorer - Release v2.13.4
v2.13.4
Feature
- Properly navigate to volume of interest based on volume meta:
- properly calculate the orientation
- properly calculate enclosed, and navigate to closest point if outside
- Added button to navigate to the point assignment UI
Bugfix
- Fixed expected siibra-api version
- Fixed previously selected point not rendering
Behind the scenes
- Temporary workaround for volume meta
- More efficient caching of meta retrieval
- TypeScript
Published by github-actions[bot] over 2 years ago
siibra-explorer - Release v2.13.3
v2.13.3
Feature
- 1um section now does not move x,z position
Behind the scene
- user added layer now sits on index 1
- TypeScript
Published by github-actions[bot] over 2 years ago
siibra-explorer - Release v2.13.2
v2.13.2
Features
- added visual display of errors relating to siibra-api
Bugfixes
- fixed displaying annotation in
saneurl - fixed feature fetching spinner
- fixed feature fetching logic
- TypeScript
Published by github-actions[bot] over 2 years ago
siibra-explorer - Release v2.13.1
v2.13.1
Bugfixes
- fixed saneurl query without accept header
- added
saneurlalso to the acceptable route - fixes
Unknownon hover prompt, fixes some issues where context menu behaves - fixes unscrollable feature container on touch devices
- TypeScript
Published by github-actions[bot] over 2 years ago
siibra-explorer - Release v2.13.0
v2.13.0
Feature
- reworked UI
- allow fsaverage grid to be toggled on/off
- disable surface face selection (until it becomes fully supported)
- allow feature to be downloaded
- main download button also downloads selected feature
- added javascript disabled page
Behind the scene
- ported the backend to use python rather than nodejs
Bugfixes
- fix URL encoded annotations
- improved reliability of URL encoding of viewer state
- TypeScript
Published by github-actions[bot] over 2 years ago
siibra-explorer - Release v2.12.5
v2.12.5
Feature
- enable connectivity for Julich Brain v3
- added version inspector in UI
- TypeScript
Published by github-actions[bot] over 2 years ago
siibra-explorer - Release v2.12.4
v2.12.4
Bugfix
- minor fix of ng-layer-tune incorrectly applying color map (#1390)
- prepare for MEBRAINS update
- fixed traverse in z direction (
<ctrl>+[wheel]/<shift>+[wheel]) (#1334)
- TypeScript
Published by github-actions[bot] over 2 years ago
siibra-explorer - Release v2.12.3
v2.12.3
Bugfix
- Visually distinguish regions that are mapped in a space to those that are not
- Remove experimental flag to VOI
- siibra-explorer now displays description and doi for more regions correctly (Julich Brain 3.0 in all MRI spaces and Julich Brain detailed maps in Big Brain spaces)
- Do not display connectivity in big brain space
- TypeScript
Published by github-actions[bot] over 2 years ago
siibra-explorer - Release v2.12.2
v2.12.2
Bugfixes
- fixes screenshot in fsaverage
- on hover region label in fsaverage now display properly
- fixes annotation mode (export annotations, annotations fail to render in viewer on startup (via shared link, local storage etc))
- fixes an issue where region definition in full assignment table can also be clicked to select the region
- TypeScript
Published by github-actions[bot] over 2 years ago
siibra-explorer - Release v2.12.1
v2.12.1
Feature
- added the option to use red/green/blue colormaps (#1366)
Bugfix
- fixed touch devices unable to navigate viewer
- fixed some volume controls not working
- TypeScript
Published by github-actions[bot] almost 3 years ago
siibra-explorer - Release v2.12.0
v2.12.0
Feature
- added opacity slider for external volumes, even if the more detail is collapsed.
- enable rat connectivity
- added visual indicators for selected subject and dataset in connectivity browser
Bugfix
- fixed fsaverage viewer "rubber banding"
Behind the scene
- update spotlight mechanics from in-house to angular CDK
- updated neuroglancer/nehuba dependency. This allows volumes with non-rigid affine to be displayed properly.
- allow siibra-api endpoint to be configured at runtime
- TypeScript
Published by github-actions[bot] almost 3 years ago
siibra-explorer - Release v2.11.4
v2.11.4
Bugfixes
- fix fsaverage label issue (by bumping siibra-api version)
- TypeScript
Published by github-actions[bot] almost 3 years ago
siibra-explorer - Release v2.11.3
v2.11.3
Bugfixes
- Fix ng-layer-tune not persisting shader selection
Behind the scene
- Bump siibra-api version
- TypeScript
Published by github-actions[bot] almost 3 years ago
siibra-explorer - Release v2.11.2
v2.11.2
Features
- Allow external layer control to persist state (#1338)
Bugfixes
- Fixed point assignment for maps that do not have statistical maps. Also fixed error messages.
- Fixed neuron display
- Fixed typos in plugin API messages
- Fixed fsaverage toggle delineation only affecting hemisphere
Behind the scenes
- Using hashed region name to encode selected region, rather than the archaic ngId & label index
- Pass messages to plugin API when not handled
- Fix lint
- Update CI
- TypeScript
Published by github-actions[bot] almost 3 years ago
siibra-explorer - Release v2.11.1
v2.11.1
Feature
- Allow point assignment result to be sorted
- Allow point assignment result to be downloaded as csv
- Informs user when atlas download should be occurring, and check popup blocker
- Restores Julich Brain 2.9 in Colin 27 space full mesh view
Bugfixes
- Fixed point assignment full table not showing
- On template/parcellation/atlas change, clear currently selected feature
Behind the scenes
- Bump siibra-api version dependency. Remove guard for feature type query restrictions
- Removed unused components
- Tweaked context menu, showing on hover effects
- now also attempts to fetch
transform.jsonwhen external layer is populated
- TypeScript
Published by github-actions[bot] almost 3 years ago
siibra-explorer - Release v2.11.0
v2.11.0
Feature
- Automatically selects human multilevel atlas on startup, if no atlases are selected
- Allow multiple region selection for visualization purposes (
<ctrl>+[click]on region) - Allow point to be selected (
[right click]) and enabling map assignment - Allow atlas download
Behind the scenes
- fixed unit tests
- updated checklist.md, removed outdated checklist item
- Reorganised help, quick tour and about page
- Simplify volume of interest wireframe show/hide
- TypeScript
Published by github-actions[bot] almost 3 years ago
siibra-explorer - fix yet more bugs
v2.2.3
9 June 2020
New features
- Import "Individual Brain Charting (IBC)" data to explorable datasets
Bugfixes
- Fixed
undefinedshowing for hemisphere metadata (#537) - Fixed non atlas image e2e test URL
- Fixed backend test specs
- Fixed redi deploy configuration
Under the hood stuff
- renamed css class for consistency
- TypeScript
Published by xgui3783 almost 6 years ago
siibra-explorer - more bugfixes
v2.2.2
Bugfixes
- Fixed PMap color map reset colormap (#523)
- Modal filters are now sorted alphabetically (#524)
- Restored ability to download csv and image from dataset preview (#522)
- Fixed Hemisphere information overflowed in region menu explore template list (#529)
- Showing region status on region context menu (#520)
- Dataset previews are now reflected in the URL state (#502) & they stagger now!
- Slightly retweaked scroll dataset container condition, to make it less strict
- Fixed maximise panel on touch enabled devices (#533)
- Dynamically fit the action buttons under datasets
Under the hood stuff
- Minor refactor to slightly decouple modules
- Added the option to develop via AOT builds
- Paved way for periodic monitoring e2e tests (with
NODE_ENV=production npm run e2e)
- TypeScript
Published by xgui3783 almost 6 years ago
siibra-explorer - Some more bugfixes
Fixed a bug preventing users from scrolling the fetched dataset containers (#508) Fixed a bug - change template from region menu was showing irrelevant regions (#507) Fixed a bug taking screenshot again does not work (#482)
- TypeScript
Published by xgui3783 almost 6 years ago