Data

Tools

Indexes

Applications

Experiments

Open Source Science

exfilms

A command-line interface tool to extract, filter, and standardise mass spectrometry data.

https://github.com/vimalnathnambiar/exfilms

Science Score: 57.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 5 DOI reference(s) in README
  • ○
    Academic publication links
  • ○
    Committers with academic emails
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (9.9%) to scientific vocabulary

Keywords

command-line-interface-tool data-extraction data-filtering data-standardisation mass-spectrometry
Last synced: 6 months ago · JSON representation ·

Repository

A command-line interface tool to extract, filter, and standardise mass spectrometry data.

Basic Info
  • Host: GitHub
  • Owner: vimalnathnambiar
  • License: mit
  • Language: JavaScript
  • Default Branch: main
  • Homepage:
  • Size: 80 MB
Statistics
  • Stars: 1
  • Watchers: 1
  • Forks: 0
  • Open Issues: 0
  • Releases: 0
Topics
command-line-interface-tool data-extraction data-filtering data-standardisation mass-spectrometry
Created about 2 years ago · Last pushed 9 months ago
Metadata Files
Readme Changelog License Citation

README.md

ExfilMS

npm docker license cicd codecov semantic-release commitizen doi-zenodo

A command-line interface tool to extract, filter, and standardise mass spectrometry data.

Installation

Prerequisites: Node.js® and Docker®

bash sudo npm install -g exfilms

Usage

bash exfilms -h

For more information, please refer to our user guide here.

License

Please refer to our license information here.

Citation

If you use this software in your work, please cite it using the following metadata:

Nambiar, V., Schiemer, T., Nambiar, S., Whiley, L., Wong, K. W., Wang, G., Holmes, E., & Wist, J. (2025). ExfilMS (Version 2.0.1) [Computer software]. Zenodo. https://doi.org/10.5281/zenodo.10976761

Owner

  • Name: Vimalnath Nambiar
  • Login: vimalnathnambiar
  • Kind: user
  • Location: Perth, Western Australia
  • Company: Murdoch University

A caffeine-based organism that turns coffee into magic ✨

Citation (CITATION.cff) 

cff-version: 1.2.0
message: If you use this software in your work, please cite it using the following metadata.
title: ExfilMS
version: 2.0.1
abstract: A command-line interface tool to extract, filter, and standardise mass spectrometry data.
keywords:
  - mass spectrometry
  - data extraction
  - data filtering
  - data standardisation
  - command-line interface tool
type: software
repository-code: https://github.com/vimalnathnambiar/exfilms
url: https://github.com/vimalnathnambiar/exfilms#readme
license: MIT
authors:
  - given-names: Vimalnath
    family-names: Nambiar
    orcid: https://orcid.org/0000-0001-5384-6788
  - given-names: Theresa
    family-names: Schiemer
    orcid: https://orcid.org/0009-0000-6508-0636
  - given-names: Shabarinath
    family-names: Nambiar
    orcid: https://orcid.org/0000-0002-6713-1705
  - given-names: Luke
    family-names: Whiley
    orcid: https://orcid.org/0000-0002-9088-4799
  - given-names: Kok Wai
    family-names: Wong
  - given-names: Guanjin
    family-names: Wang
    orcid: https://orcid.org/0000-0002-5258-0532
  - given-names: Elaine
    family-names: Holmes
    orcid: https://orcid.org/0000-0002-0556-8389
  - given-names: Julien
    family-names: Wist
    orcid: https://orcid.org/0000-0002-3416-2572
publisher: Zenodo
doi: 10.5281/zenodo.10976761
date-released: 2025-03-17

GitHub Events

Total
  • Release event: 3
  • Push event: 23
  • Create event: 3
Last Year
  • Release event: 3
  • Push event: 23
  • Create event: 3

Committers

Last synced: 8 months ago

All Time
  • Total Commits: 250
  • Total Committers: 2
  • Avg Commits per committer: 125.0
  • Development Distribution Score (DDS): 0.076
Past Year
  • Commits: 24
  • Committers: 2
  • Avg Commits per committer: 12.0
  • Development Distribution Score (DDS): 0.125
Top Committers
Name Email Commits
vmalnathnambiar v****r@h****m 231
semantic-release-bot s****t@m****t 19
Committer Domains (Top 20 + Academic)
martynus.net: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 7
  • Total pull requests: 0
  • Average time to close issues: about 2 hours
  • Average time to close pull requests: N/A
  • Total issue authors: 1
  • Total pull request authors: 0
  • Average comments per issue: 1.57
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
Pull Request Authors
Top Labels
Issue Labels
Pull Request Labels

Packages

  • Total packages: 1
  • Total downloads:
    • npm 3 last-month
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 19
  • Total maintainers: 1
npmjs.org: exfilms

A command-line interface tool to extract, filter, and standardise mass spectrometry data.

  • Versions: 19
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 3 Last month
Rankings
Dependent repos count: 32.4%
Average: 39.4%
Dependent packages count: 46.4%
Maintainers (1)
vimalnathnambiar
Last synced: 6 months ago

Dependencies

.github/workflows/build-publish.yml actions
  • actions/checkout v3 composite
  • actions/setup-node v3 composite
  • codecov/codecov-action v4 composite
  • codecov/test-results-action v1 composite
Dockerfile docker
  • node latest build
package-lock.json npm
  • 884 dependencies
package.json npm
  • @semantic-release/changelog ^6.0.3 development
  • @semantic-release/git ^10.0.1 development
  • @types/clear ^0.1.4 development
  • @types/figlet ^1.5.8 development
  • @types/inquirer ^9.0.7 development
  • @types/pako ^2.0.3 development
  • @types/papaparse ^5.3.14 development
  • @types/yargs ^17.0.32 development
  • @vitest/coverage-v8 ^1.3.1 development
  • @vitest/ui ^1.3.1 development
  • commitizen ^4.3.0 development
  • cz-conventional-changelog ^3.3.0 development
  • eslint ^8.57.0 development
  • eslint-config-cheminfo ^9.2.0 development
  • prettier ^2.8.8 development
  • semantic-release ^23.0.5 development
  • vitest ^1.3.1 development
  • arraybuffer-xml-parser ^0.6.0
  • base64-arraybuffer ^1.0.2
  • chalk ^5.2.0
  • clear ^0.1.0
  • figlet ^1.6.0
  • inquirer ^9.2.7
  • node-fetch ^3.3.1
  • ora ^6.3.1
  • pako ^2.1.0
  • papaparse ^5.4.1
  • yargs ^17.7.2