bonelab-website

Source code for the Bone Imaging Laboratory website.

https://github.com/bonelab/bonelab-website

Science Score: 26.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • CITATION.cff file
  • codemeta.json file
    Found codemeta.json file
  • .zenodo.json file
    Found .zenodo.json file
  • DOI references
  • Academic publication links
  • Academic email domains
  • Institutional organization owner
  • JOSS paper metadata
  • Scientific vocabulary similarity
    Low similarity (15.6%) to scientific vocabulary
Last synced: 6 months ago · JSON representation

Repository

Source code for the Bone Imaging Laboratory website.

Basic Info
  • Host: GitHub
  • Owner: Bonelab
  • License: bsd-3-clause
  • Language: HTML
  • Default Branch: main
  • Homepage: https://bonelab.ca
  • Size: 420 MB
Statistics
  • Stars: 0
  • Watchers: 0
  • Forks: 0
  • Open Issues: 1
  • Releases: 0
Created over 1 year ago · Last pushed 6 months ago
Metadata Files
Readme License Citation

README.md

Bone Imaging Laboratory

We are a team of researchers at the University of Calgary focused on studying bone, with an emphasis on using advanced medical imaging. Visit bonelab.ca

Webpage Updates

Any lab member can make changes to the web site by creating a branch. Pull requests to merge to the main branch are approved by the site administrator.

If you simply want to request a change (add a photo, update a member profile, etc.), send an email.

Create a branch and clone the repository to your computer. Download, install and run Docker. Navigate to the base directory of your local copy of the repo and get things running: $ cd bonelab-website $ ./.docker/run.sh Itll process the site and then give you the URL to put in your browser: http://localhost:4000 Edit your local repo files, but do it on the branch citation-update or similar. If that branch is not already created, then make it: $ git checkout -b citation-update Sometimes you may need to update these local files (e.g., if you ran Docker): $ git restore _cite/.cache/cache.db $ git restore _data/citations.yaml Push your changes to that branch and then create a new pull request on github to merge the new branch with main. This will run the GitHub actions with appropriate permissions.

Common Types of Update

Here are some tips for simple updates.

Post a new idea for a project

A new idea can be added by simply creating a new file in _posts/ such as 2024-08-19-vertebral-fractures.md.

Members

Each member file is stored in _members. See other files for examples or refer to template.txt in that directory. Update your profile, such as personal links (e.g., Email, Instagram, LinkedIn, PubMed, etc) or your biography as you please.

Adding a new member is as simple as creating a new member file in _members.

Profile photos should be 600px X 600px and are stored in images/headshots using the naming format FirstnameLastname.png.

All changes to _members are reflected on the web page upon pushing to GitHub and merging.

Citations

Citations are based on the ORCID ID of Dr. Steven Boyd. If you see a missing citation you can edit _data/sources.yaml and identify the missing publication by DOI. If you want to associate an image with a particular citation, that is defined in the same file. Typically a copy of the first page of the journal publication is a good image to use, and these are stored in images/journal/.

University of Calgary Brand Standards

Since we are all members of the University of Calgary we try to stick to the brand standards. Details can be found here.

Primary Colours

| | | |:-------------------------:|:-------------------------:| |Red: d6001c d6001c|Gold: ffcd00 ffcd00|

Secondary Colours

| | | | | |:-------------------------:|:-------------------------:|:-------------------------:|:-------------------------:| |Light orange: ffa300 ffa300|Dark orange: ff671f ff671f|Rubine Red C: ed0a72 ed0a72|1945 C (Berry): 9c0534 9c0534|

Accent Colours

| | | | | |:-------------------------:|:-------------------------:|:-------------------------:|:-------------------------:| |2400 C (Teal): 47a67c 47a67c|100 C (Light Yellow): ffe57b ffe57b| 7602 C (Brown): 6c3302 6c3302|2311 C (Taupe): d3ac8b d3ac8b|

Neutrals (for text only)

| | | | |:-------------------------:|:-------------------------:|:-------------------------:| |Black: 000000 000000|Dark Grey: 6d6e71 6d6e71| Light Grey: c7c8ca c7c8ca|

Built with Lab Website Template

Owner

  • Name: Bone Imaging Laboratory
  • Login: Bonelab
  • Kind: organization
  • Email: bonelab@ucalgary.ca

GitHub Events

Total
  • Delete event: 13
  • Issue comment event: 15
  • Push event: 164
  • Pull request review event: 4
  • Pull request event: 75
  • Create event: 15
Last Year
  • Delete event: 13
  • Issue comment event: 15
  • Push event: 164
  • Pull request review event: 4
  • Pull request event: 75
  • Create event: 15

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 1
  • Total pull requests: 43
  • Average time to close issues: 4 days
  • Average time to close pull requests: 2 days
  • Total issue authors: 1
  • Total pull request authors: 5
  • Average comments per issue: 0.0
  • Average comments per pull request: 0.35
  • Merged pull requests: 33
  • Bot issues: 1
  • Bot pull requests: 10
Past Year
  • Issues: 1
  • Pull requests: 41
  • Average time to close issues: 4 days
  • Average time to close pull requests: 2 days
  • Issue authors: 1
  • Pull request authors: 5
  • Average comments per issue: 0.0
  • Average comments per pull request: 0.32
  • Merged pull requests: 31
  • Bot issues: 1
  • Bot pull requests: 10
Top Authors
Issue Authors
  • github-actions[bot] (1)
Pull Request Authors
  • stevenkboyd (23)
  • github-actions[bot] (10)
  • friedchickean (5)
  • BrynMatheson (4)
  • wallematthias (1)
Top Labels
Issue Labels
Pull Request Labels
enhancement (1)

Dependencies

.github/workflows/build-preview.yaml actions
  • actions/checkout v4 composite
  • actions/configure-pages v4 composite
  • crazy-max/ghaction-dump-context v2 composite
  • mxschmitt/action-tmate v3 composite
  • rossjrw/pr-preview-action v1.4.7 composite
  • ruby/setup-ruby v1.172.0 composite
.github/workflows/build-site.yaml actions
  • JamesIves/github-pages-deploy-action v4.5.0 composite
  • actions/checkout v4 composite
  • actions/configure-pages v4 composite
  • crazy-max/ghaction-dump-context v2 composite
  • mxschmitt/action-tmate v3 composite
  • ruby/setup-ruby v1.172.0 composite
.github/workflows/first-time-setup.yaml actions
  • actions/checkout v4 composite
  • actions/github-script v7 composite
  • crazy-max/ghaction-dump-context v2 composite
  • mxschmitt/action-tmate v3 composite
  • peterjgrainger/action-create-branch v3.0.0 composite
  • stefanzweifel/git-auto-commit-action v5 composite
.github/workflows/on-pages.yaml actions
.github/workflows/on-pull-request.yml actions
.github/workflows/on-push.yml actions
.github/workflows/on-schedule.yaml actions
.github/workflows/update-citations.yaml actions
  • actions/checkout v4 composite
  • actions/setup-python v5 composite
  • crazy-max/ghaction-dump-context v2 composite
  • mxschmitt/action-tmate v3 composite
  • peter-evans/create-pull-request v6 composite
  • stefanzweifel/git-auto-commit-action v5 composite
  • tj-actions/verify-changed-files v18 composite
.github/workflows/update-url.yaml actions
  • actions/checkout v4 composite
  • actions/configure-pages v4 composite
  • actions/github-script v7 composite
  • crazy-max/ghaction-dump-context v2 composite
  • mxschmitt/action-tmate v3 composite
  • stefanzweifel/git-auto-commit-action v5 composite
  • tj-actions/verify-changed-files v18 composite
.docker/Dockerfile docker
  • ruby 3.1.2 build
_cite/requirements.txt pypi
  • PyYAML *
  • diskcache *
  • google-search-results *
  • manubot *
  • python-dotenv *
  • rich *
Gemfile rubygems
  • jekyll-feed >= 0 development
  • jekyll-last-modified-at >= 0 development
  • jekyll-redirect-from >= 0 development
  • jekyll-sitemap >= 0 development
  • jekyll-spaceship >= 0 development
  • html-proofer ~> 5.0
  • jekyll ~> 4.3
  • webrick ~> 1.7
Gemfile.lock rubygems
  • Ascii85 1.1.0
  • addressable 2.8.1
  • afm 0.2.2
  • async 2.8.1
  • bundler 2.5.6
  • colorator 1.1.0
  • concurrent-ruby 1.2.2
  • console 1.23.4
  • em-websocket 0.5.3
  • ethon 0.16.0
  • eventmachine 1.2.7
  • ffi 1.15.5
  • fiber-annotation 0.2.0
  • fiber-local 1.0.0
  • forwardable-extended 2.6.0
  • gemoji 3.0.1
  • google-protobuf 3.22.0
  • hashery 2.1.2
  • html-proofer 5.0.8
  • http_parser.rb 0.8.0
  • i18n 1.12.0
  • io-event 1.4.4
  • jekyll 4.3.2
  • jekyll-feed 0.17.0
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