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cytotable

Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.

https://github.com/cytomining/cytotable

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    1 of 5 committers (20.0%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (3.6%) to scientific vocabulary

Keywords

cellprofiler python single-cell-analysis way-lab

Keywords from Contributors

cytomine profiles morphological-profiling carpenter-lab microscopy hetnet interactive microscopy-image-analysis image-based-profiling network-simulation
Last synced: 6 months ago · JSON representation

Repository

Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.

Basic Info
Statistics
  • Stars: 15
  • Watchers: 5
  • Forks: 6
  • Open Issues: 75
  • Releases: 16
Topics
cellprofiler python single-cell-analysis way-lab
Created over 3 years ago · Last pushed 6 months ago
Metadata Files
Readme Contributing License Code of conduct Citation

docs/readme.md

Documentation Readme

Please see contributing for more information.

Owner

  • Name: cytomining
  • Login: cytomining
  • Kind: organization

GitHub Events

Total
  • Create event: 82
  • Release event: 5
  • Issues event: 28
  • Watch event: 5
  • Delete event: 73
  • Issue comment event: 92
  • Push event: 130
  • Pull request event: 186
  • Pull request review comment event: 63
  • Pull request review event: 119
  • Fork event: 1
Last Year
  • Create event: 82
  • Release event: 5
  • Issues event: 28
  • Watch event: 5
  • Delete event: 73
  • Issue comment event: 92
  • Push event: 130
  • Pull request event: 186
  • Pull request review comment event: 63
  • Pull request review event: 119
  • Fork event: 1

Committers

Last synced: 9 months ago

All Time
  • Total Commits: 245
  • Total Committers: 5
  • Avg Commits per committer: 49.0
  • Development Distribution Score (DDS): 0.347
Past Year
  • Commits: 87
  • Committers: 2
  • Avg Commits per committer: 43.5
  • Development Distribution Score (DDS): 0.287
Top Committers
Name Email Commits
Dave Bunten d****n@c****u 160
dependabot[bot] 4****] 77
Gregory Way g****y@g****m 5
Erik Serrano 3****a 2
Vincent Rubinetti v****i@g****m 1
Committer Domains (Top 20 + Academic)
cuanschutz.edu: 1

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 70
  • Total pull requests: 239
  • Average time to close issues: 7 months
  • Average time to close pull requests: 6 days
  • Total issue authors: 8
  • Total pull request authors: 3
  • Average comments per issue: 0.73
  • Average comments per pull request: 0.89
  • Merged pull requests: 189
  • Bot issues: 0
  • Bot pull requests: 157
Past Year
  • Issues: 21
  • Pull requests: 194
  • Average time to close issues: 13 days
  • Average time to close pull requests: 3 days
  • Issue authors: 5
  • Pull request authors: 2
  • Average comments per issue: 0.33
  • Average comments per pull request: 0.86
  • Merged pull requests: 156
  • Bot issues: 0
  • Bot pull requests: 144
View more stats
Top Authors
Issue Authors
  • d33bs (57)
  • jenna-tomkinson (4)
  • axiomcura (2)
  • MikeLippincott (2)
  • shntnu (2)
  • gwaybio (1)
  • dependabot[bot] (1)
  • arka2696 (1)
  • sarakh1999 (1)
Pull Request Authors
  • dependabot[bot] (164)
  • d33bs (81)
  • axiomcura (1)
Top Labels
Issue Labels
enhancement (37) bug (9) documentation (6) question (3) dependencies (2) python (1)
Pull Request Labels
dependencies (164) python (143) release-patch (4) github_actions (1) bug (1)

Packages

  • Total packages: 3
  • Total downloads:
    • pypi 426 last-month
  • Total dependent packages: 0
    (may contain duplicates)
  • Total dependent repositories: 1
    (may contain duplicates)
  • Total versions: 57
  • Total maintainers: 2
proxy.golang.org: github.com/cytomining/cytotable
  • Versions: 19
  • Dependent Packages: 0
  • Dependent Repositories: 0
Rankings
Dependent packages count: 5.5%
Average: 5.7%
Dependent repos count: 5.9%
Last synced: 6 months ago
proxy.golang.org: github.com/cytomining/CytoTable
  • Versions: 19
  • Dependent Packages: 0
  • Dependent Repositories: 0
Rankings
Dependent packages count: 5.5%
Average: 5.7%
Dependent repos count: 5.9%
Last synced: 6 months ago
pypi.org: cytotable

Transform CellProfiler and DeepProfiler data for processing image-based profiling readouts with Pycytominer and other Cytomining tools.

  • Versions: 19
  • Dependent Packages: 0
  • Dependent Repositories: 1
  • Downloads: 426 Last month
Rankings
Dependent packages count: 10.0%
Forks count: 14.2%
Downloads: 15.1%
Average: 16.8%
Dependent repos count: 21.8%
Stargazers count: 23.1%
Maintainers (2)
d33bs falquaddoomi
Last synced: 6 months ago