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Recent Releases of mettannotator

mettannotator - v1.4.0

What's Changed

  • Added a pseudogene and spurious ORF detection workflow by @tgurbich in https://github.com/EBI-Metagenomics/mettannotator/pull/49 and by @mberacochea in https://github.com/EBI-Metagenomics/mettannotator/pull/51. Pseudofinder is used to identify pseudogenes, in addition to the pseudogene detection workflow that is part of Bakta. CDS with AntiFam hits are now removed from the final GFF output.
  • Added output modifications, generation of an additional GFF file and README instructions to simplify ENA/GenBank submission by @tgurbich in https://github.com/EBI-Metagenomics/mettannotator/pull/52.
  • Mettannotator now uses the 'rRNA' feature for ribosomal RNA instead of grouping it with ncRNA as was done in previous versions. ncRNA classes are now added to the ninth column for ncRNA by @tgurbich in https://github.com/EBI-Metagenomics/mettannotator/pull/52.
  • Added tRNA locus tags by @tgurbich in https://github.com/EBI-Metagenomics/mettannotator/pull/50
  • Fixed temporary directory handling for multiple tools (Prokka, InterProScan, tRNAscan-SE, CRISPRCasFinder, AMRFinderPlus) by implementing process-specific tmp directories in workdir by @mberacochea in https://github.com/EBI-Metagenomics/mettannotator/pull/46
  • Added more instructions for Nextflow run by @mberacochea in https://github.com/EBI-Metagenomics/mettannotator/pull/48

Full Changelog: https://github.com/EBI-Metagenomics/mettannotator/compare/v1.3...v1.4.0

- Python
Published by tgurbich about 1 year ago

mettannotator - v1.3

What's Changed

  • Added citation by @tgurbich in https://github.com/EBI-Metagenomics/mettannotator/pull/37
  • Unifre mount issue with docker. by @mberacochea in https://github.com/EBI-Metagenomics/mettannotator/pull/39 and https://github.com/EBI-Metagenomics/mettannotator/pull/41
  • Fixes for ref dbs mounts for docker in ips and unifire. Mem limit to emapper --dbmem flag by @mberacochea in https://github.com/EBI-Metagenomics/mettannotator/pull/42
  • Version bump to v1.3 for release by @mberacochea in https://github.com/EBI-Metagenomics/mettannotator/pull/43

Full Changelog: https://github.com/EBI-Metagenomics/mettannotator/compare/v1.2...v1.3

- Python
Published by mberacochea over 1 year ago

mettannotator - v1.2

What's Changed

  • Introduced the fast mode (--fast option) that allows to run mettannotator without InterProScan, UniFIRE and SanntiS, significantly reducing runtime and resource use.
  • Sped up execution in regular mode by improving eggNOG-mapper runtime.
  • Cleaned up function description in the product field of the final GFF file.
  • Cleaned up product description for ncRNA.
  • Bug fixes in the database download subworkflow.
  • Bug fixes in function assignment.

Full Changelog: https://github.com/EBI-Metagenomics/mettannotator/compare/v1.1...v1.2

- Python
Published by tgurbich over 1 year ago

mettannotator - v1.1

What's Changed

  • Added a --bakta flag to use Bakta instead of Prokka as the gene caller for bacterial genomes
  • Enabled annotation of Archaea
  • Added Circos plot generation
  • Added a pre-processing script to help with the input file generation
  • Updated AMRFinderPlus
  • Added instructions for mobilome annotation
  • UniFIRE bug fixes

Full Changelog: https://github.com/EBI-Metagenomics/mettannotator/compare/v1.0...v1.1

- Python
Published by tgurbich almost 2 years ago

mettannotator - v1.0

- Python
Published by mberacochea almost 2 years ago