mixedmodels.jl - v4.38.1

MixedModels v4.38.1

NEWS file. Diff since v4.38.0

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues:

• default bootstrap table shows NaNs for sigmas in models without a dispersion parameter (#859)

Merged pull requests: - fix display and confint of bootstrap for models without dispersion parameter (#862) (@palday)

- Julia
Published by github-actions[bot] 4 months ago

mixedmodels.jl - v5.0.2

MixedModels v5.0.2

NEWS file. Diff since v5.0.1

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - default bootstrap table shows NaNs for sigmas in models without a dispersion parameter (#859)

Merged pull requests: - fix display and confint of bootstrap for models without dispersion parameter (#861) (@palday)

- Julia
Published by github-actions[bot] 4 months ago

mixedmodels.jl - v5.0.1

MixedModels v5.0.1

NEWS file. Diff since v5.0.0

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - Create separate MixedModelsDatasets.jl package (#602)

Merged pull requests: - fix for Grouping() with latest CategoricalArrays (#860) (@palday)

- Julia
Published by github-actions[bot] 4 months ago

mixedmodels.jl - v5.0.0

MixedModels v5.0.0

NEWS file. Diff since v4.38.0

Version 5.0.0 contains some user-visible changes and many changes in the underlying code. - Options related to multithreading in the bootstrap have been completely removed. - Model fitting now uses unconstrained optimization, with a post-fit canonicalization step so that the diagonal elements of the lower Cholesky factor are non-negative. Relatedly, support for constrained optimization has been completely removed and the lowerbd field of OptSummary dropped. - The default optimizer has changed to use NLopt's implementation of NEWUOA. Further changes to the default optimizer are considered non-breaking. - The profile function now respects backend and optimizer settings. - The deprecated hide_progress keyword argument has been removed in favor of the shorter and affirmative progress. - A fitlog is always kept and stored as a Tables.jl-compatible column table. - See NEWS.md for more details

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - Consistency in progress options (#567) - Use RegressionFormulae.jl for defining nesting syntax in fixed effects (#599) - Simplify fitlog logic (#618) - Always use -2 loglikelihood instead of deviance for LRT computations (#633) - Drop multithreading in bootstrap (#675) - Error in profile(m) mutates m and fails to clean up (#794) - Should there be a method for predict(m::GenearlizedLinearMixedModel; type = ...) (#817) - export likelihoodratiotest using an alias for non-nested tests (#818) - Missing method in MixedModelsForwardDiffExt.jl (#845) - Not able to run examples as can't find "dat.rda" file (#847) - dataset and datasets has been removed (#852)

Merged pull requests: - Add data and script for issue 833 (#835) (@dmbates) - [WIP] Switch to unconstrained optimizers - step 1 (#840) (@dmbates) - stopgap fix for Aqua.jl on Julia 1.13 nightly (#843) (@palday) - Revert "stopgap fix for Aqua.jl on Julia 1.13 nightly (#843)" (#844) (@palday) - Bump actions/checkout from 4 to 5 (#846) (@dependabot[bot]) - Deprecations, documentation and clean up in preparation for 5.0 (#848) (@palday) - remove lowerbd field from OptSummary (#849) (@palday) - replace fitlog with a column table, always populate it (#850) (@palday) - Add timingtable.jl (#851) (@dmbates) - optimization info/backend updates (#853) (@palday) - remove dataset and datasets (#854) (@palday) - remove local definitions of fulldummy and nesting operator (#855) (@palday) - allow specifying type argument in GLMM predict on original data (#856) (@palday) - provide a breadcrumb when spline interpolation fails during profiling (#857) (@palday) - rework likelihoodratio test to be just a pretty-printing wrapper around lrtest (#858) (@palday)

- Julia
Published by github-actions[bot] 4 months ago

mixedmodels.jl - v4.38.0

MixedModels v4.38.0

NEWS file. Diff since v4.37.0

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release.

Merged pull requests: - FiniteDiff.jl support (#842) (@palday)

- Julia
Published by github-actions[bot] 5 months ago

mixedmodels.jl - v4.37.0

MixedModels v4.37.0

NEWS file. Diff since v4.36.0

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release.

Merged pull requests: - ForwardDiff compatibility in an extension (#841) (@palday)

- Julia
Published by github-actions[bot] 6 months ago

mixedmodels.jl - v4.36.0

MixedModels v4.36.0

NEWS file. Diff since v4.35.2

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - Multivariate modeling results in "Formula contains no random effects" (#831) - Automatic conversion of grouping variables to categorical for @formula but not term() syntax (#836)

Merged pull requests: - remove stale import (#834) (@palday) - Automatic grouping with programmatic formula construction (#837) (@palday) - update format workflow (#839) (@palday)

- Julia
Published by github-actions[bot] 6 months ago

mixedmodels.jl - v4.35.2

MixedModels v4.35.2

NEWS file. Diff since v4.35.1

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release.

Merged pull requests: - Fix markdown show on 1.13 (#829) (@palday)

- Julia
Published by github-actions[bot] 7 months ago

mixedmodels.jl - v4.35.1

MixedModels v4.35.1

NEWS file. Diff since v4.35.0

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - Potential issue with rankUpdate! dosctring (#813) - refit! on a prfit! model starts at a parameter vector of zeros (#826)

Merged pull requests: - reset optsum.final in unfit! (#828) (@palday)

- Julia
Published by github-actions[bot] 7 months ago

mixedmodels.jl - v4.35.0

MixedModels v4.35.0

NEWS file. Diff since v4.34.1

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - Resample MixedModel object and refit (#806) - can we make ReMat immutable, if we use copyto! to update wtz? (#824)

Merged pull requests: - Cook's Distance for linear mixed model (#825) (@palday)

- Julia
Published by github-actions[bot] 8 months ago

mixedmodels.jl - v4.34.1

MixedModels v4.34.1

NEWS file. Diff since v4.34.0

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release.

Merged pull requests: - small fixes in documentation (#812) (@ajinkya-k) - Allow version 0.19 of BSplineKit - to silence warnings (#823) (@dmbates)

- Julia
Published by github-actions[bot] 9 months ago

mixedmodels.jl - v4.34.0

MixedModels v4.34.0

NEWS file. Diff since v4.33.0

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release.

Merged pull requests: - make BlockedSparse immutable, add note why other types must be mutable (#815) (@palday)

- Julia
Published by github-actions[bot] 9 months ago

mixedmodels.jl - v4.33.0

MixedModels v4.33.0

NEWS file. Diff since v4.32.0

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - Have LikelihoodRatioTest extend StatsAPI. HypothesisTest (#683)

Merged pull requests: - LikelihoodRatioTest extends StatsAPI.HypothesisTest (#814) (@palday)

- Julia
Published by github-actions[bot] 10 months ago

mixedmodels.jl - v4.32.0

MixedModels v4.32.0

NEWS file. Diff since v4.31.0

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - Potential issue in sparseL: number of nonzero elements seems incorrect (#807) - Add lmm (or something similar) as a convenience fitting function (#809)

Merged pull requests: - added lmm and glmm as convenience wrappers for fit (#810) (@ajinkya-k)

- Julia
Published by github-actions[bot] 10 months ago

mixedmodels.jl - v4.31.0

MixedModels v4.31.0

NEWS file. Diff since v4.30.1

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release.

Merged pull requests: - docs(src/GaussHermite): recent path links (#804) (@guspan-tanadi) - added function aliases that dont contain unicode characters for convenience (#805) (@ajinkya-k)

- Julia
Published by github-actions[bot] 10 months ago

mixedmodels.jl - v4.30.1

MixedModels v4.30.1

NEWS file. Diff since v4.30.0

• compat bump for BSplineKit

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - saveoptsum saves lmm, but not glmm (#798)

Merged pull requests: - CompatHelper: bump compat for BSplineKit to 0.18, (keep existing compat) (#803) (@github-actions[bot])

- Julia
Published by github-actions[bot] 11 months ago

mixedmodels.jl - v4.30.0

MixedModels v4.30.0

NEWS file. Diff since v4.29.1

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - Additional details in documentation for Grouping() (#538) - Remove repeated initial entry in fitlog (#619) - Refactor NLopt boilerplate into an easy function call (#689) - Switch to PRIMA.bobyqa for optimization? (#742)

Merged pull requests: - refactor optimization to make it easy to add new backends (#802) (@palday)

- Julia
Published by github-actions[bot] 11 months ago

mixedmodels.jl - v4.29.1

MixedModels v4.29.1

NEWS file. Diff since v4.29.0

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release.

Merged pull requests: - populate optsum in prfit! (#801) (@palday)

- Julia
Published by github-actions[bot] 12 months ago

mixedmodels.jl - v4.29.0

MixedModels v4.29.0

NEWS file. Diff since v4.28.0

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release.

Merged pull requests: - experimental harness for PRIMA (#799) (@palday)

- Julia
Published by github-actions[bot] 12 months ago

mixedmodels.jl - v4.28.0

MixedModels v4.28.0

NEWS file. Diff since v4.27.1

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - Non-positive definite matrix when fitting nested GLMM (#792)

Merged pull requests: - attempt to find better starting values for GLMM when defaults aren't positive semidefinite (#796) (@palday)

- Julia
Published by github-actions[bot] about 1 year ago

mixedmodels.jl - v4.27.1

MixedModels v4.27.1

NEWS file. Diff since v4.27.0

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release.

Merged pull requests: - Bump codecov/codecov-action from 4 to 5 (#793) (@dependabot[bot]) - add finally block for restoring original model in profiling (#795) (@palday)

- Julia
Published by github-actions[bot] about 1 year ago

mixedmodels.jl - v4.27.0

MixedModels v4.27.0

NEWS file. Diff since v4.26.1

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - What is current best practice for saving a GLMM? (#790)

Merged pull requests: - Bump thollander/actions-comment-pull-request from 2 to 3 (#788) (@dependabot[bot]) - restore and save optsum for GLMM (#791) (@palday)

- Julia
Published by github-actions[bot] about 1 year ago

mixedmodels.jl - v4.26.1

MixedModels v4.26.1

NEWS file. Diff since v4.26.0

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - confint(::MixedModelProfile) swaps lower and upper when profiled model is fitted with REML (#784)

Merged pull requests: - fix flipped lower and upper in profile CI (#785) (@palday)

- Julia
Published by github-actions[bot] over 1 year ago

mixedmodels.jl - v4.26.0

MixedModels v4.26.0

NEWS file. Diff since v4.25.4

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release.

Merged pull requests: - tolerances for issingular (#783) (@palday)

- Julia
Published by github-actions[bot] over 1 year ago

mixedmodels.jl - v4.25.4

MixedModels v4.25.4

NEWS file. Diff since v4.25.3

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - What is the purpose of the 10-iteration failure when updating GLM vectors/Laplace approx in MixedModels.jl (#780)

Merged pull requests: - Add precompile step for rePCA (#749) (@palday) - tracking down non covergence in Issue 780 (#781) (@palday)

- Julia
Published by github-actions[bot] over 1 year ago

mixedmodels.jl - v4.25.3

MixedModels v4.25.3

NEWS file. Diff since v4.25.2

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - MixedModel Equivalent to GLM's (mod.mm.assign) (#661) - No intercept models (e.g. Resource Selection Functions) (#777)

Merged pull requests: - rework passing and handling of FE coefficients to simulate! for rank deficient models (#778) (@palday) - bump minimum tested compat for macOS to Monterey (#779) (@palday)

- Julia
Published by github-actions[bot] over 1 year ago

mixedmodels.jl - v4.25.2

MixedModels v4.25.2

NEWS file. Diff since v4.25.1

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release.

Merged pull requests: - begin supporting public keyword (#776) (@palday)

- Julia
Published by github-actions[bot] over 1 year ago

mixedmodels.jl - v4.25.1

MixedModels v4.25.1

NEWS file. Diff since v4.25.0

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - restoreoptsum fails after change in JSON file structure in 4.25.0 (#774)

Merged pull requests: - More sophisticated checks in restoreoptsum. (#775) (@dmbates)

- Julia
Published by github-actions[bot] over 1 year ago

mixedmodels.jl - v4.25.0

MixedModels v4.25.0

NEWS file. Diff since v4.24.1

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - Type inference fails for logdet(m) and pwrss(m) and, hence for objective(m) (#770)

Merged pull requests: - Force return type on pwrss and logdet to provide stable type inference on objective (#771) (@dmbates) - Small performance tweaks (#772) (@palday) - use ::Matrix{T} instead of ::T to aid type inference (#773) (@dmbates)

- Julia
Published by github-actions[bot] over 1 year ago

mixedmodels.jl - v4.24.1

MixedModels v4.24.1

NEWS file. Diff since v4.24.0

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release.

Merged pull requests: - import and re-export lrtest (#769) (@palday)

- Julia
Published by github-actions[bot] over 1 year ago

mixedmodels.jl - v4.24.0

MixedModels v4.24.0

NEWS file. Diff since v4.23.1

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - Test failures on Julia v1.11.0-alpha and v1.12.0-DEV (#757)

Merged pull requests: - add Apple silicon to CI (#760) (@palday) - Setup dependabot for GHA (#761) (@palday) - Bump julia-actions/setup-julia from 1 to 2 (#762) (@dependabot[bot]) - use @everywhere in distributed bootstrap example (#764) (@palday) - Update for ExplicitImports check (#765) (@dmbates) - Bump julia-actions/cache from 1 to 2 (#766) (@dependabot[bot]) - delegate as many GLMM properties as possible to internal LMM (#767) (@palday)

- Julia
Published by github-actions[bot] over 1 year ago

mixedmodels.jl - v4.23.1

MixedModels v4.23.1

NEWS file. Diff since v4.23.0

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - Need to adjust parametricbootstrap display for GLMMs w/o scale parameter (#741)

Merged pull requests: - Fix simulate! when only the estimable coefficients are provided (#756) (@palday) - bump Documenter compat (#759) (@palday)

- Julia
Published by github-actions[bot] almost 2 years ago

mixedmodels.jl - v4.23.0

MixedModels v4.23.0

NEWS file. Diff since v4.22.5

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - Error on parametricbootstrap for rank deficient models (#754)

Merged pull requests: - remove Pkg.add from Benchmark (#711) (@palday) - an assortment of CI bumps (#752) (@palday) - Support for rank deficiency in bootstrap (#755) (@palday)

- Julia
Published by github-actions[bot] almost 2 years ago

mixedmodels.jl - v4.22.5

MixedModels v4.22.5

NEWS file. Diff since v4.22.4

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - Change hide_progress in parametricbootstrap to progress and use ProgressMeter (#627) - Use ExplicitImports.jl to change imports (#747)

Merged pull requests: - Replace broadcasted lambda with explicit loop (#738) (@palday) - use FMA where possible in fitting (#740) (@palday)

- Julia
Published by github-actions[bot] almost 2 years ago

mixedmodels.jl - v4.22.4

MixedModels v4.22.4

NEWS file. Diff since v4.22.3

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release.

Merged pull requests: - nest log and throws tests (1.11-nightly compat) (#735) (@palday) - Two Typos (#737) (@likanzhan) - A test using a deep copy of a model should reset the initial parameter values. (#744) (@dmbates) - Switch to explicit imports of names from packages (#748) (@dmbates)

- Julia
Published by github-actions[bot] almost 2 years ago

mixedmodels.jl - v4.22.3

MixedModels v4.22.3

NEWS file. Diff since v4.22.2

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - parametric vs non-parametric bootstrap? (#724) - save also formula with saveoptsum() (#725)

Merged pull requests: - Update versions of dependencies, comment out @debug calls (#733) (@dmbates) - Update Project.toml (#734) (@dmbates)

- Julia
Published by github-actions[bot] about 2 years ago

mixedmodels.jl - v4.22.2

MixedModels v4.22.2

NEWS file. Diff since v4.22.1

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - Parametric bootstrapping for hypothesis testing (#716)

Merged pull requests: - use MixedModelsDatasets (#718) (@palday) - compat entry checked by Aqua in 1.11 (#721) (@dmbates) - Spellcheck CI (#726) (@palday) - Bump version for a compat release (#727) (@palday) - add compat for stdlibs (#728) (@palday)

- Julia
Published by github-actions[bot] about 2 years ago

mixedmodels.jl - v4.22.1

MixedModels v4.22.1

NEWS file. Diff since v4.22.0

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - Warning:ProgressUnknown(desc::AbstractString; kwargs...)is deprecated, useProgressUnknown(; desc = desc, kwargs...)instead. (#719)

Merged pull requests: - usage of ProgressUnknown fixed (#720) (@yoninazarathy)

- Julia
Published by github-actions[bot] over 2 years ago

mixedmodels.jl - v4.22.0

MixedModels v4.22.0

NEWS file. Diff since v4.21.1

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release.

Merged pull requests: - show method for bootstrap, profile; equal tail confint (#715) (@palday) - deprecate hide_progress (#717) (@palday)

- Julia
Published by github-actions[bot] over 2 years ago

mixedmodels.jl - v4.21.1

MixedModels v4.21.1

NEWS file. Diff since v4.21.0

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - The ftol_rel should be a small number, not a large number, right? (#713)

Merged pull requests: - fix typo that changes scale (#714) (@palday)

- Julia
Published by github-actions[bot] over 2 years ago

mixedmodels.jl - v4.21.0

MixedModels v4.21.0

NEWS file. Diff since v4.20.0

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release.

Merged pull requests: - auto apply Grouping() to grouping variables (#652) (@palday)

- Julia
Published by github-actions[bot] over 2 years ago

mixedmodels.jl - v4.20.0

MixedModels v4.20.0

NEWS file. Diff since v4.19.0

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - Add TypedTables as a dependency to make it easier to return tables from simulations? (#631)

Merged pull requests: - Enhance the tbl property of a parametricbootstrap result (#702) (@dmbates) - add benchmark GHA (#710) (@palday)

- Julia
Published by github-actions[bot] over 2 years ago

mixedmodels.jl - v4.19.0

MixedModels v4.19.0

NEWS file. Diff since v4.18.0

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release.

Merged pull requests: - Add coefnames(::ReMat) (#709) (@palday)

- Julia
Published by github-actions[bot] over 2 years ago

mixedmodels.jl - v4.18.0

MixedModels v4.18.0

NEWS file. Diff since v4.17.0

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release.

Merged pull requests: - typos (#704) (@likanzhan) - support for NLopt 1.0 (#706) (@palday) - better error when formula variables missing from dataset (#707) (@palday)

- Julia
Published by github-actions[bot] over 2 years ago

mixedmodels.jl - v4.17.0

MixedModels v4.17.0

NEWS file. Diff since v4.16.0

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - Rescaling causes huge differences in fixed effect coefficients (#638)

Merged pull requests: - Recover from PIRLS failure by returning finitial (#616) (@palday) - allow the user to disable amalgamation (#673) (@palday) - More informative error messages (#698) (@palday)

- Julia
Published by github-actions[bot] over 2 years ago

mixedmodels.jl - v4.16.0

MixedModels v4.16.0

NEWS file. Diff since v4.15.0

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - ERROR: MethodError: Cannotconvertan object of type Tuple{Matrix{Float64}, ReMat{Float64, 1}} to an object of type Matrix{Float64} (#696) - ERROR: MethodError: no method matching r2(::LinearMixedModel{Float64}) (#697) - Hosmer-Lemeshow test in GLMM (binomial family) (#699) - Specify maximum number of iterations (#700) - modelmatrix() errors when random factor is a string (#701)

Merged pull requests: - Add tolerances in deserialization (#703) (@palday)

- Julia
Published by github-actions[bot] over 2 years ago

mixedmodels.jl - v4.15.0

MixedModels v4.15.0

NEWS file. Diff since v4.14.1

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - Redefinition of models method in test scripts (#691)

Merged pull requests: - distributed and reduced precision bootstrap (#694) (@palday) - update CI actions (#695) (@palday)

- Julia
Published by github-actions[bot] over 2 years ago

mixedmodels.jl - v4.14.1

MixedModels v4.14.1

NEWS file. Diff since v4.14.0

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release.

Merged pull requests: - use Suppressor.jl to hide log messages in tests (#684) (@palday) - avoid repeated def of models method (#692) (@dmbates) - CompatHelper: bump compat for BSplineKit to 0.16, (keep existing compat) (#693) (@github-actions[bot])

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Published by github-actions[bot] over 2 years ago

mixedmodels.jl - v4.14.0

MixedModels v4.14.0

NEWS file. Diff since v4.13.1

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release.

Merged pull requests: - Profile the objective (#639) (@dmbates)

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Published by github-actions[bot] over 2 years ago

mixedmodels.jl - v4.13.1

MixedModels v4.13.1

NEWS file. Diff since v4.13.0

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release.

Merged pull requests: - CompatHelper: bump compat for StatsBase to 0.34, (keep existing compat) (#687) (@github-actions[bot])

- Julia
Published by github-actions[bot] over 2 years ago

mixedmodels.jl - v4.13.0

MixedModels v4.13.0

NEWS file. Diff since v4.12.1

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release.

Merged pull requests: - undo #634, return Table not DictTable (#682) (@dmbates) - Bump version number (#685) (@dmbates)

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Published by github-actions[bot] over 2 years ago

mixedmodels.jl - v4.12.1

MixedModels v4.12.1

NEWS file. Diff since v4.12.0

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release.

Merged pull requests: - remove explicit Vararg (#680) (@palday) - Migrate from SnoopPrecompile to PrecompileTools (#681) (@timholy)

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Published by github-actions[bot] over 2 years ago

mixedmodels.jl - v4.12.0

MixedModels v4.12.0

NEWS file. Diff since v4.11.0

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release.

Merged pull requests: - better compatibility with RegressionFormulae.jl (#677) (@palday)

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Published by github-actions[bot] over 2 years ago

mixedmodels.jl - v4.11.0

MixedModels v4.11.0

NEWS file. Diff since v4.10.0

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - Remove @compat from lines with destructuring (#666)

Merged pull requests: - raneftables returning NamedTuple of DictTables (#634) (@dmbates)

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Published by github-actions[bot] over 2 years ago

mixedmodels.jl - v4.10.0

MixedModels v4.10.0

NEWS file. Diff since v4.9.0

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - Failures in threaded_replicate test (#640) - predict will give incorrect answers when newdata is rank deficient (#642)

Merged pull requests: - Deprecate mulithreading in bootstrap (#674) (@palday) - support rank deficiency in prediction (#676) (@palday)

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Published by github-actions[bot] over 2 years ago

mixedmodels.jl - v4.9.0

MixedModels v4.9.0

NEWS file. Diff since v4.8.2

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - typos (#668)

Merged pull requests: - integrate changes from StatsModels 0.7 (upcoming release) (#664) (@kleinschmidt) - set Julia minimum compat to 1.8 (#665) (@palday) - Update benchmarks, single global contrasts Dict (#667) (@dmbates) - fix some typos (#669) (@palday) - fix badge in README (#670) (@palday) - hide fit progress during precompilation (#671) (@palday)

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Published by github-actions[bot] over 2 years ago

mixedmodels.jl - v4.8.2

MixedModels v4.8.2

NEWS file. Diff since v4.8.1

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release.

Merged pull requests: - use Aqua for static analysis (#659) (@palday) - use SnoopPrecompile instead of precompile file (#663) (@palday)

- Julia
Published by github-actions[bot] almost 3 years ago

mixedmodels.jl - v4.8.1

MixedModels v4.8.1

NEWS file. Diff since v4.8.0

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release.

Merged pull requests: - more tinkering on 638 (#654) (@palday) - Update CI concurrency to take advantage of "new" GHA features (#655) (@palday) - Update Mac CI (#656) (@palday) - don't fit a GLM when fixed effects are empty (#657) (@palday) - patch bump (#660) (@palday)

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Published by github-actions[bot] about 3 years ago

mixedmodels.jl - v4.8.0

MixedModels v4.8.0

NEWS file. Diff since v4.7.3

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - Predict: only one level found (#625)

Merged pull requests: - exploration from issue 638 (#646) (@palday) - tinkerings on 641 (#647) (@palday) - allow predicting from a single observation (#653) (@palday)

- Julia
Published by github-actions[bot] about 3 years ago

mixedmodels.jl - v4.7.3

MixedModels v4.7.3

NEWS file. Diff since v4.7.2

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release.

Merged pull requests: - better error msg for models without random effects (#651) (@palday)

- Julia
Published by github-actions[bot] about 3 years ago

mixedmodels.jl - v4.7.2

MixedModels v4.7.2

NEWS file. Diff since v4.7.1

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - Amalgamate copyto! and scaleinflate! in updateL! (#643) - document across public-facing dependencies (#644)

Merged pull requests: - Extend rankUpdate! method to allow for upper tri (#636) (@dmbates) - improve "API" docs (#645) (@palday) - Combine updateL! operations on diagonal blocks (#648) (@dmbates)

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Published by github-actions[bot] about 3 years ago

mixedmodels.jl - v4.7.1

MixedModels v4.7.1

NEWS file. Diff since v4.7.0

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - out of memory (#629) - possible to fix the residual variance to a particular value (#630) - Level 2 or 3 weights (#635)

Merged pull requests: - Avoid repeating first objective evaluation in fit! (#637) (@dmbates)

- Julia
Published by github-actions[bot] over 3 years ago

mixedmodels.jl - v4.7.0

MixedModels v4.7.0

NEWS file. Diff since v4.6.4

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - Rank deficiency tests fail on nightly with Apple Silicon (#600) - LoadError: PosDefException: matrix is not positive definite; Cholesky factorization failed (#611) - export StatsModels.AbstractContrasts (#620) - Predict: Response column must be initialized to a non-missing numeric value (#626)

Merged pull requests: - attempt rescaling of poorly scaled problems (#615) (@palday) - fix dependent column test on Apple silicon (#622) (@palday) - Create docs-cleanup.yml (#624) (@palday) - loosen type restriction on filename for optsum serialization and rename arg (#628) (@palday)

- Julia
Published by github-actions[bot] over 3 years ago

mixedmodels.jl - v4.6.4

MixedModels v4.6.4

NEWS file. Diff since v4.6.3

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - Taking Symbol of LHS of transformed column triggering error (#613)

Merged pull requests: - Simplify BLAS configuration printing (#597) (@dmbates) - add in benchmark script for precompile (#610) (@palday) - Stop exporting removed describeblocks (#612) (@nalimilan) - support transformed response for predict (#614) (@palday)

- Julia
Published by github-actions[bot] over 3 years ago

mixedmodels.jl - v4.6.3

MixedModels v4.6.3

NEWS file. Diff since v4.6.2

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release.

Merged pull requests: - CompatHelper: bump compat for StatsFuns to 1, (keep existing compat) (#607) (@github-actions[bot]) - first attempt at using SnoopCompile to speed things up (#608) (@palday)

- Julia
Published by github-actions[bot] over 3 years ago

mixedmodels.jl - v4.6.2

MixedModels v4.6.2

NEWS file. Diff since v4.6.1

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release.

Merged pull requests: - rework predict docstring (#603) (@palday) - Efficiency improvements in predict (#604) (@palday) - Add a missing space (#605) (@likanzhan)

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Published by github-actions[bot] over 3 years ago

mixedmodels.jl - v4.6.1

MixedModels v4.6.1

NEWS file. Diff since v4.6.0

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - Export StatsModels.AbstractContrasts from MixedModels.jl (#589) - A simulated example where MixedModels.jl is non-trivially slower than lmer from lme4 (#591)

Merged pull requests: - Update news entry for 4.6 (#590) (@palday) - Style Guide Auto-Suggest and PR template (#595) (@palday) - fix README formatting (#596) (@palday) - broaden shortestcovint to fit collection (#598) (@palday)

- Julia
Published by github-actions[bot] almost 4 years ago

mixedmodels.jl - v4.6.0

MixedModels v4.6.0

NEWS file. Diff since v4.5.0

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - WARNING: `both GLM and Distributions export "Normal"; uses of it in module MixedModels must be qualified (#587)

Merged pull requests: - Allow LMM to init GLMM (#588) (@palday)

- Julia
Published by github-actions[bot] almost 4 years ago

mixedmodels.jl - v4.5.0

MixedModels v4.5.0

NEWS file. Diff since v4.4.1

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release.

Merged pull requests: - Better handling of constant response (#578) (@palday)

- Julia
Published by github-actions[bot] about 4 years ago

mixedmodels.jl - v4.4.1

MixedModels v4.4.1

NEWS file. Diff since v4.4.0

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - Return missing values for predict (#575) - interval (#576)

Merged pull requests: - Support for bootstrapping models with a mixture of correlation structures (#577) (@palday)

- Julia
Published by github-actions[bot] about 4 years ago

mixedmodels.jl - v4.4.0

MixedModels v4.4.0

NEWS file. Diff since v4.3.0

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release.

Merged pull requests: - constructor for MixedModel dispatches to subtype (#572) (@palday) - CompatHelper: bump compat for Arrow to 2, (keep existing compat) (#573) (@github-actions[bot]) - Correct a typo (#574) (@dmbates)

- Julia
Published by github-actions[bot] over 4 years ago

mixedmodels.jl - v4.3.0

MixedModels v4.3.0

NEWS file. Diff since v4.2.1

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - shortestcovint() and .allpars fail for bootstrap results of zerocorr model (#569)

Merged pull requests: - option for reduced precision in bootstrap results (#566) (@palday) - Add columntable method for OptSummary (#568) (@dmbates) - Fix allpars for zerocorr (#570) (@palday)

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Published by github-actions[bot] over 4 years ago

mixedmodels.jl - v4.2.1

MixedModels v4.2.1

NEWS file. Diff since v4.2.0

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - Is is possible to bootstrap sample the levels of the random effects with parametricbootstrap()? (#562) - issingular failed for GLMM with random-slopes (#563)

Merged pull requests: - issingular for GLMM with fast=false (#564) (@palday)

- Julia
Published by github-actions[bot] over 4 years ago

mixedmodels.jl - v4.2.0

MixedModels v4.2.0

NEWS file. Diff since v4.1.1

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - parametricbootstrap does not support zerocorr model (#560)

Merged pull requests: - Support for zerocorr in the bootstrap (#561) (@palday)

- Julia
Published by github-actions[bot] over 4 years ago

mixedmodels.jl - v4.1.1

MixedModels v4.1.1

NEWS file. Diff since v4.1.0

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release.

Merged pull requests: - delegate property access in ZeroCorr to inner Term (#558) (@palday)

- Julia
Published by github-actions[bot] over 4 years ago

mixedmodels.jl - v4.1.0

MixedModels v4.1.0

NEWS file. Diff since v4.0.0

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - Speeding things up (#234) - Julia 1.6 and LTS Release Plans (#477) - Incorrect fact in description of Normalized Gauss-Hermite quadrature (#525) - Adjustments for julia-v1.7.0 (#532) - Add JuliaFormatter to CI (#542) - _zerocorr! methods in src/linearmixedmodel.jl seem vestigial (#546) - Add fitlog kwarg for logging the parameter vector during optimization (#549) - Identifiablity compared to lmer (#550)

Merged pull requests: - Fix support table column (#543) (@palday) - Added opt. fname argument to sparseL and condVar (#545) (@dmbates) - compat fixes for Julia 1.7 (#547) (@palday) - Fix ReMat's docstring + contravariance issue (#548) (@palday) - Allow specifying sigma in LinearMixedModel (#551) (@palday) - add fitlog (#552) (@palday) - Faster leverage function (#553) (@dmbates) - NEWS update for 545 (#556) (@palday)

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Published by github-actions[bot] over 4 years ago

mixedmodels.jl - v4.0.0

MixedModels v4.0.0

NEWS file. Diff since v3.9.0

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - No predict method for GeneralizedLinearMixedModels (#175) - Bootstrap and simulate don't resample weights (#466) - Update verbose output to use ProgressMeter (#513)

Merged pull requests: - Simulation and prediction methods (#427) (@palday) - Add a progress meter for LMM fits (#539) (@dmbates) - Release 4.0 (#540) (@palday) - set documenter devbranch to main (#541) (@palday)

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Published by github-actions[bot] over 4 years ago

mixedmodels.jl - v3.9.0

MixedModels v3.9.0

NEWS file. Diff since v3.8.0

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - Methods for DataAPI generics applied to ReMat (#527) - GLMM estimation depends on order of fixed effects? (#528) - Random effect changes when interaction level numbering changes (#529) - σs needs to learn the fields in Diagonal (#531)

Merged pull requests: - Add methods for StatsBase API (#520) (@dmbates) - LinearAlgebra.mul! instead of unscaledre! (#526) (@dmbates) - Add explanation for a broken test. Correct a typo (#530) (@dmbates) - σs for Diagonal ReMat and test (#533) (@dmbates) - Support for StatsModels.formula (#536) (@palday) - Rename allequal to isconstant (#537) (@dmbates)

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Published by github-actions[bot] over 4 years ago

mixedmodels.jl - v3.8.0

MixedModels v3.8.0

NEWS file. Diff since v3.7.1

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - MaxTime: limit time spend for optimisation (#521)

Merged pull requests: - add maxtime NLopt option to OptSummary (#524) (@palday)

- Julia
Published by github-actions[bot] over 4 years ago

mixedmodels.jl - v3.7.1

MixedModels v3.7.1

NEWS file. Diff since v3.7.0

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release.

Merged pull requests: - add support for BlockedSparse in sparseL (#523) (@palday)

- Julia
Published by github-actions[bot] over 4 years ago

mixedmodels.jl - v3.7.0

MixedModels v3.7.0

NEWS file. Diff since v3.6.0

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - Does OptSummary need to be a parametric type? (#504) - Remove DataFramesMeta from docs (#512) - Storage of Parameter Vector for GLMM Bootstrap (#517)

Merged pull requests: - Add sparseL extractor and use it in condVar (#492) (@dmbates) - Fix formatting in Grouping docstring (#511) (@likanzhan) - Remove DataFramesMeta from the docs (#515) (@palday) - CompatHelper: bump compat for "Distributions" to "0.25" (#516) (@github-actions[bot]) - omit lowerbound on beta for GLMM bootstrap (#518) (@palday) - BACKPORT: condVar + GLMM bootstrap lowerbound compat (#519) (@palday)

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Published by github-actions[bot] over 4 years ago

mixedmodels.jl - v3.6.0

MixedModels v3.6.0

NEWS file. Diff since v3.5.2

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - Likelihood ratio test to compare Linear[Mixed]Model (#491) - ranef(; named=true) doesn't work for GeneralizedLinearMixedModel (#499) - Save and restore an OptSummary (#505)

Merged pull requests: - take advantage of multiple dispatch for GLMM comparability check (#500) (@palday) - Define StructType for OptSummary (#506) (@dmbates) - LRT for comparing non-mixed to mixed models (#508) (@palday) - Update NEWS.md for #506 (#509) (@dmbates) - BACKPORT: LRT for comparing non-mixed to mixed models (#510) (@palday)

- Julia
Published by github-actions[bot] over 4 years ago

mixedmodels.jl - v3.5.2

MixedModels v3.5.2

NEWS file. Diff since v3.5.1

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - ftest for GLMM (#503)

Merged pull requests: - Deprecate named kwarg in 3.x branch (#507) (@palday)

- Julia
Published by github-actions[bot] over 4 years ago

mixedmodels.jl - v3.5.1

MixedModels v3.5.1

NEWS file. Diff since v3.5.0

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release.

Merged pull requests: - update mime show for RE without FE (#501) (@palday) - BACKPORT: mimeshow RE without FE (#502) (@palday)

- Julia
Published by github-actions[bot] over 4 years ago

mixedmodels.jl - v3.5.0

MixedModels v3.5.0

NEWS file. Diff since v3.4.1

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - Make Distribution/Family Part of the Type Parameter for GLMM (#463) - Be Diagonal where you can (#487)

Merged pull requests: - Diagonalize ZeroCorr (#489) (@palday) - Add response family/distribution to GLMM type parameter (#490) (@palday) - Threading improvements (#493) (@palday) - the trunk is now called main (#494) (@palday) - Disable ProgressBar for logs and when requested (#495) (@palday) - update standard tests to include 1.6 (#496) (@palday) - Update Tier1.yml (#497) (@dmbates) - BACKPORT: Threading and CI improvements (#498) (@palday)

- Julia
Published by github-actions[bot] almost 5 years ago

mixedmodels.jl - v3.4.1

MixedModels v3.4.1

NEWS file. Diff since v3.4.0

NB: Closed issues and pull requests are sorted temporally and so may include backports to other versions or work in the development branch for an upcoming breaking release. Please see the NEWS file for changes sorted by release. Closed issues: - Offset for Poisson models (#453)

Merged pull requests: - Allow for offset in GLMMs and simplify wts (#482) (@dmbates) - FORWARDPORT: shortestcovint for MixedModelBootstrap objects (#485) (@palday) - bring back LazyArtifacts (#486) (@palday) - BACKPORT: GLMM Offsets and the Return of Lazy Artifacts (#488) (@palday)

- Julia
Published by github-actions[bot] almost 5 years ago

mixedmodels.jl - v3.4.0

MixedModels v3.4.0

NEWS file. Diff since v3.3.0

Merged pull requests: - docfix: allpars returns a column table (#483) (@palday) - shortestcovint for MixedModelBootstrap objects (#484) (@palday)

- Julia
Published by github-actions[bot] almost 5 years ago

mixedmodels.jl - v3.3.0

MixedModels v3.3.0

NEWS file. Diff since v3.2.1

Closed issues: - Does the response need to be stored as an FeMat? (#250) - show methods for other MIME types (#273) - values of GLMM parameter estimates in show method (#307) - oxide test fails when using MKL (#448)

Merged pull requests: - Xy block (#464) (@dmbates) - FOWARDPORT: Prettier Markdown (and thus better Documenter Support) (#478) (@palday) - QR-Based Rank Determination and Pivoting (#479) (@dmbates) - Show methods for HTML and LaTeX (#480) (@palday) - BACKPORT: LaTeX and HTML show (#481) (@palday)

- Julia
Published by github-actions[bot] almost 5 years ago

mixedmodels.jl - v3.2.1

MixedModels v3.2.1

NEWS file. Diff since v3.2.0

Merged pull requests: - Prettier Markdown (and thus better Documenter Support) (#476) (@palday)

- Julia
Published by github-actions[bot] almost 5 years ago

mixedmodels.jl - v3.2.0

MixedModels v3.2.0

NEWS file. Diff since v3.1.6

Closed issues: - show methods for other MIME types (#273) - Programmatically Creating RE Terms (#462)

Merged pull requests: - Runtime random effect terms (and zerocorr) (#470) (@kleinschmidt) - Markdown show methods for our types (#474) (@palday) - BACKPORT: Markdown show methods for our types (#475) (@palday)

- Julia
Published by github-actions[bot] almost 5 years ago

mixedmodels.jl - v3.1.6

MixedModels v3.1.6

NEWS file. Diff since v3.1.5

Closed issues: - Abstract type for collection of mixed models (#325) - Should we mark a model as unfitted after simulate! ? (#417) - Parse string for @formula (#426) - Inexact Int Conversion in Binomial Log Likelihood (#461) - Drop kwarg named from ranef (#467) - isnested assumes that grouping terms have single blocking vars (#471)

Merged pull requests: - Signed PooledArrays for 4.x (#460) (@palday) - introduce an abstract type for collections of fits (#465) (@palday) - simulate! marks models as unfitted (#468) (@palday) - remove (unused) named kwarg from ranef (#469) (@palday) - use fname instead of term.sym directly (#472) (@kleinschmidt) - Backport #472 (#473) (@palday)

- Julia
Published by github-actions[bot] almost 5 years ago

mixedmodels.jl - v3.1.5

MixedModels v3.1.5

This is a compatibility release with PooledArrays 1.0, which improves Arrow compatibility across languages. The TestData artifacts have been correspondingly updated.

NEWS file. Diff since v3.1.4

Closed issues: - Nested blocking vars with vector RT (#452)

Merged pull requests: - Issue-based TagBot Trigger (#450) (@palday) - Automatically link to NEWS file in release notes (#451) (@palday) - Use vector of matrices for A and L in LinearMixedModel (#456) (@dmbates) - Change version number to reflect breaking changes (#457) (@palday) - Support new PooledArrays 1.0 release (#458) (@quinnj) - Support PooledArrays 1.0 and Update Artifacts (#459) (@palday)

- Julia
Published by github-actions[bot] almost 5 years ago

mixedmodels.jl - v3.1.4

MixedModels v3.1.4

Diff since v3.1.3

Merged pull requests: - Modularize constructors (#449) (@palday)

- Julia
Published by github-actions[bot] about 5 years ago

mixedmodels.jl - v3.1.3

MixedModels v3.1.3

Diff since v3.1.2

Merged pull requests: - rankUpdate for BlockDiagonal by Dense (#447) (@palday)

- Julia
Published by github-actions[bot] about 5 years ago

mixedmodels.jl - v3.1.2

MixedModels v3.1.2

Diff since v3.1.1

Closed issues: - Nested models (#445)

Merged pull requests: - A typo: MixedEffects.jl --> MixedModels.jl (#440) (@likanzhan) - Allow v1.0.0 of StaticArrays and Arrow (#441) (@dmbates) - Eagerness to avoid LazyArtifacts (#444) (@palday) - rankUpdate! method for Diagonal + Dense (#446) (@palday)

- Julia
Published by github-actions[bot] about 5 years ago

mixedmodels.jl - v3.1.1

MixedModels v3.1.1

This is largely a compatibility release for new versions of DataFrames, BlockArrays and Arrow as well as upcoming changes in LinearAlgebra in Julia 1.6.

Diff since v3.1.0

Closed issues: - Arrow.jl is tagging 1.0 (#434)

Merged pull requests: - Update benchmarks to TestData. (#416) (@dmbates) - Better loglikelihood for GLMM (#419) (@palday) - Check BLAS vendor, fix test warning, rephrase warn (#428) (@dmbates) - MixedModel.datasets() --> MixedModels.datasets() (#429) (@likanzhan) - loosen floating point equality constraint (#430) (@palday) - Swap adjoint and triangular wrappers (#431) (@dkarrasch) - Force BlasInt type for piv (#432) (@dmbates) - CI using MKL (#433) (@palday) - CompatHelper: bump compat for "BlockArrays" to "0.13" (#435) (@github-actions[bot]) - categorical! no longer in DataFrames 0.22 (#436) (@dmbates) - Add in Arrow 1.0 compatibility (#437) (@palday) - Add back in the Arrow compat entry (#438) (@palday)

- Julia
Published by github-actions[bot] about 5 years ago

mixedmodels.jl - v3.1.0

MixedModels v3.1.0

Diff since v3.0.2

Closed issues: - simulate! methods for GLMM (#245)

Merged pull requests: - simulate! and thus parametricbootstrap for GLMM (#418) (@palday) - CompatHelper: bump compat for "Arrow" to "0.4" (#425) (@github-actions[bot])

- Julia
Published by github-actions[bot] about 5 years ago

mixedmodels.jl - v3.0.2

MixedModels v3.0.2

Diff since v3.0.1

Merged pull requests: - Create manualdocs.yml (#422) (@palday) - Fix docs deployment (#423) (@palday)

- Julia
Published by github-actions[bot] about 5 years ago

mixedmodels.jl - v3.0.1

MixedModels v3.0.1

Minor compat fixes and bumps for Distributions and Julia nightly.

Diff since v3.0.0

Merged pull requests: - CompatHelper: bump compat for "Distributions" to "0.24" (#413) (@github-actions[bot]) - update TestData in Artifact (#415) (@dmbates) - Run CI on tag push, not on release creation (#420) (@ararslan) - Fix propertynames method ambiguity on Julia nightly (#421) (@ararslan)

- Julia
Published by github-actions[bot] about 5 years ago

mixedmodels.jl - v3.0.0

MixedModels v3.0.0

Please see the NEWS file for a more extensive overview.

Diff since v2.4.0

Closed issues: - Question on ZeroCorr term / AbstractRandomEffectsTerm (#293) - add a NEWS file (#359) - Switch to Arrow storage format for TestData (#381) - Testing on julia-v1.6.0-DEV (#387) - zerocorr! doesn't set all ReTerms to be ZeroCorr (#396) - refit! for GLMM? (#400) - Failure on julia-nightly (#402) - Document that model matrix is always at least double precision / Float64 (#407) - Add other model-fit criteria to show method for GeneralizedLinearMixedModel (#411)

Merged pull requests: - Use arrow format for datasets ci skip (@dmbates) - AbstractReTerm (#395) (@palday) - PosDefException in rank deficiency docs (#401) (@palday) - Fixes for running tests on 1.6.0-dev (#404) (@dmbates) - GLMM refit! (#405) (@palday) - the end of zerocorr! and checking consistent ReMat eltypes (#406) (@palday) - Update documentation (#408) (@dmbates) - Update README (#410) (@palday) - Clean up show methods and documentation (#412) (@dmbates)

- Julia
Published by github-actions[bot] about 5 years ago