Science Score: 57.0%
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✓CITATION.cff file
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✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 4 DOI reference(s) in README -
○Academic publication links
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○Scientific vocabulary similarity
Low similarity (5.0%) to scientific vocabulary
Repository
PhyloTwin
Basic Info
Statistics
- Stars: 1
- Watchers: 1
- Forks: 0
- Open Issues: 0
- Releases: 2
Metadata Files
README.md
PhyloTwin - Diversity estimation pipeline
PhyloTwin is an automated pipeline for the analysis of phylogenetic diversity using GBIF occurrence data. It is a successor of PhyloNext with significantly improved performance and new features.
Installation
bash
nextflow pull vmikk/phylotwin -r main
Funding
The software was developed as part of the Prototype Biodiversity Digital Twin (BioDT) project. More information about the project can be found at https://biodt.eu/use-cases/phylogenetic-diversity.
Citation
Mikryukov V, Abarenkov K, Jeppesen T, Schigel D, Frøslev T (2024). Prototype biodiversity digital twin: Phylogenetic diversity // Research Ideas and Outcomes, 10, e124988. https://doi.org/10.3897/rio.10.e124988
Mikryukov V, Abarenkov K, Laffan S, Robertson T, McTavish EJ, Jeppesen TS, Waller J, Blissett M, Kõljalg U, Miller JT (2024). PhyloNext: A pipeline for phylogenetic diversity analysis of GBIF-mediated data // BMC Ecology and Evolution, 24(1), 76. https://doi.org/10.1186/s12862-024-02256-9
Owner
- Name: Vladimir Mikryukov
- Login: vmikk
- Kind: user
- Location: Tartu, Estonia
- Company: The University of Tartu
- Twitter: vmikkkk
- Repositories: 54
- Profile: https://github.com/vmikk
Citation (CITATION.cff)
cff-version: 1.2.0 title: "PhyloNext v2 backend - the core pipeline for estimating phylogeneic diversity using GBIF-mediated data and OpenTreeOfLife phylogenies" type: software authors: - family-names: "Mikryukov" given-names: "Vladimir" orcid: "https://orcid.org/0000-0003-2786-2690" - family-names: "Guldberg Frøslev" given-names: "Tobias" - family-names: "Abarenkov" given-names: "Kessy" - family-names: "Laffan" given-names: "Shawn" - family-names: "Robertson" given-names: "Tim" - family-names: "McTavish" given-names: "Emily Jane" - family-names: "Jeppesen Stjernegaard" given-names: "Thomas" - family-names: "Waller" given-names: "John" - family-names: "Blissett" given-names: "Matthew" - family-names: "Kõljalg" given-names: "Urmas" - family-names: "Miller" given-names: "Joseph T." doi: 10.5281/zenodo.14883481 url: "https://github.com/vmikk/phylotwin" repository-code: "https://github.com/vmikk/phylotwin" license: MIT version: 0.6.0 date-released: 2025-03-19
GitHub Events
Total
- Release event: 2
- Push event: 48
- Create event: 4
Last Year
- Release event: 2
- Push event: 48
- Create event: 4
Issues and Pull Requests
Last synced: 11 months ago
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- Total issue authors: 0
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- Average comments per issue: 0
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Past Year
- Issues: 0
- Pull requests: 0
- Average time to close issues: N/A
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- Issue authors: 0
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- Average comments per issue: 0
- Average comments per pull request: 0
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- Bot issues: 0
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