echopype
Enabling interoperability and scalability in ocean sonar data analysis
Science Score: 67.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 3 DOI reference(s) in README -
○Academic publication links
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✓Committers with academic emails
9 of 40 committers (22.5%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (12.5%) to scientific vocabulary
Keywords
Keywords from Contributors
Repository
Enabling interoperability and scalability in ocean sonar data analysis
Basic Info
- Host: GitHub
- Owner: OSOceanAcoustics
- License: apache-2.0
- Language: Python
- Default Branch: main
- Homepage: https://echopype.readthedocs.io/
- Size: 95.8 MB
Statistics
- Stars: 113
- Watchers: 17
- Forks: 86
- Open Issues: 106
- Releases: 32
Topics
Metadata Files
README.md
Echopype
Echopype is a package built to enable interoperability and scalability in ocean sonar data processing. These data are widely used for obtaining information about the distribution and abundance of marine animals, such as fish and krill. Our ability to collect large volumes of sonar data from a variety of ocean platforms has grown significantly in the last decade. However, most of the new data remain under-utilized. echopype aims to address the root cause of this problem - the lack of interoperable data format and scalable analysis workflows that adapt well with increasing data volume - by providing open-source tools as entry points for scientists to make discovery using these new data.
Watch the echopype talk at SciPy 2019 for background, discussions and a quick demo!
Documentation
Learn more about echopype in the official documentation at https://echopype.readthedocs.io. Check out executable examples in the companion repository https://github.com/OSOceanAcoustics/echopype-examples.
Contributing
You can find information about how to contribute to echopype at our Contributing Page.
Echopype doesn't run on your data?
Please report any bugs by creating issues on GitHub.
Pull requests are always welcome!
Contributors
Wu-Jung Lee (@leewujung) founded the echopype project in 2018 and continue to be the primary contributor together with Caesar Tuguinay(@ctuguinay). Emilio Mayorga (@emiliom), Landung "Don" Setiawan (@lsetiawan), Praneeth Ratna(@praneethratna), Brandon Reyes (@b-reyes), Kavin Nguyen (@ngkavin) and Imran Majeed (@imranmaj) have contributed significantly to the code. Valentina Staneva (@valentina-s) is also part of the development team.
A complete list of direct contributors is on our GitHub Contributors Page.
Acknowledgement
We thank all previous and current contributors to Echopype, including those whose contributions do not include code. We thank Dave Billenness of ASL Environmental Sciences for providing the AZFP Matlab Toolbox as reference for developing support for the AZFP echosounder, Rick Towler (@rhtowler) of the NOAA Alaska Fisheries Science Center for providing low-level file parsing routines for Simrad EK60 and EK80 echosounders, and Alejandro Ariza (@alejandro-ariza) for developing NumPy implementation of acoustic analysis functions via Echopy, which we referenced for several Echopype functions.
We also thank funding support from the National Science Foundation, NOAA Ocean Exploration, NOAA Fisheries, and software engineering support from the University of Washington Scientific Software Engineering Center (SSEC), as part of the Schmidt Futures Virtual Institute for Scientific Software (VISS) in 2023.
License
Echopype is licensed under the open source Apache 2.0 license.
Copyright (c) 2018-2024, Echopype Developers.
Owner
- Name: Open-Source Ocean Acoustics
- Login: OSOceanAcoustics
- Kind: organization
- Repositories: 6
- Profile: https://github.com/OSOceanAcoustics
Home for open source tools and resources in ocean acoustics
Citation (CITATION.cff)
cff-version: 1.2.0
message: "If you use this software, please cite it as below."
authors:
- family-names: "Lee"
given-names: "Wu-Jung"
orcid: "https://orcid.org/0000-0002-4112-2034"
- family-names: "Setiawan"
given-names: "Landung"
orcid: "https://orcid.org/0000-0002-1624-2667"
- family-names: "Tuguinay"
given-names: "Caesar"
orcid: "https://orcid.org/0009-0000-6652-1093"
- family-names: "Mayorga"
given-names: "Emilio"
orcid: "https://orcid.org/0000-0003-2574-4623"
- family-names: "Staneva"
given-names: "Valentina"
orcid: "https://orcid.org/0000-0002-3412-0364"
title: "Echopype"
doi: 10.5281/zenodo.3906999
url: "https://github.com/OSOceanAcoustics/echopype"
preferred-citation:
type: article
authors:
- family-names: "Lee"
given-names: "Wu-Jung"
orcid: "https://orcid.org/0000-0002-4112-2034"
- family-names: "Setiawan"
given-names: "Landung"
orcid: "https://orcid.org/0000-0002-1624-2667"
- family-names: "Tuguinay"
given-names: "Caesar"
orcid: "https://orcid.org/0009-0000-6652-1093"
- family-names: "Mayorga"
given-names: "Emilio"
orcid: "https://orcid.org/0000-0003-2574-4623"
- family-names: "Staneva"
given-names: "Valentina"
orcid: "https://orcid.org/0000-0002-3412-0364"
doi: "10.1093/icesjms/fsae133"
journal: "ICES Journal of Marine Science"
month: 12
start: 1941 # First page number
end: 1951 # Last page number
title: "Interoperable and scalable echosounder data processing with Echopype"
issue: 10
volume: 181
year: 2024
GitHub Events
Total
- Create event: 22
- Release event: 3
- Issues event: 59
- Watch event: 15
- Delete event: 20
- Member event: 1
- Issue comment event: 356
- Push event: 77
- Pull request review comment event: 46
- Pull request review event: 95
- Pull request event: 218
- Fork event: 14
Last Year
- Create event: 22
- Release event: 3
- Issues event: 59
- Watch event: 15
- Delete event: 20
- Member event: 1
- Issue comment event: 356
- Push event: 77
- Pull request review comment event: 46
- Pull request review event: 95
- Pull request event: 218
- Fork event: 14
Committers
Last synced: 7 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| leewujung | l****g@g****m | 763 |
| Kavin | n****7@g****m | 458 |
| Landung Setiawan | l****s@u****u | 220 |
| Emilio Mayorga | e****a@g****m | 112 |
| Caesar Tuguinay | 8****y | 85 |
| dependabot[bot] | 4****] | 79 |
| pre-commit-ci[bot] | 6****] | 71 |
| b-reyes | 5****s | 66 |
| Rick Towler | r****r@g****m | 41 |
| rick.towler | r****r@n****v | 37 |
| imranmaj | 4****j | 37 |
| vagrant | v****t@l****n | 34 |
| Praneeth Ratna | 6****a | 17 |
| Valentina Staneva | 1****s | 11 |
| Paul Robinson | p****n@g****m | 9 |
| cyrf0006 | F****r@d****a | 9 |
| FletcherFT | f****x@g****m | 8 |
| Chuck Anderson | c****n@n****v | 6 |
| Filipe Fernandes | o****f@g****m | 6 |
| Shivam Agarwal | 3****6 | 5 |
| marianpena | l****i@y****m | 5 |
| Aaron Marburg | a****g@a****u | 3 |
| Anant Mittal | a****l@c****u | 3 |
| Mark Langhirt | m****t@g****m | 3 |
| Veronica Martinez | v****z@n****v | 3 |
| Rob Blackwell | r****8@b****k | 2 |
| Veronica Martinez | v****z@c****l | 2 |
| oftfrfbf | r****k@g****m | 2 |
| Soham Butala | 3****a | 2 |
| Gavin Macaulay | g****n@m****z | 2 |
| and 10 more... | ||
Committer Domains (Top 20 + Academic)
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 547
- Total pull requests: 1,104
- Average time to close issues: 5 months
- Average time to close pull requests: 14 days
- Total issue authors: 72
- Total pull request authors: 39
- Average comments per issue: 3.65
- Average comments per pull request: 2.42
- Merged pull requests: 938
- Bot issues: 1
- Bot pull requests: 183
Past Year
- Issues: 42
- Pull requests: 176
- Average time to close issues: 28 days
- Average time to close pull requests: 5 days
- Issue authors: 19
- Pull request authors: 15
- Average comments per issue: 1.5
- Average comments per pull request: 1.9
- Merged pull requests: 132
- Bot issues: 0
- Bot pull requests: 53
Top Authors
Issue Authors
- leewujung (229)
- emiliom (84)
- lsetiawan (55)
- b-reyes (37)
- ctuguinay (26)
- ngkavin (8)
- imranmaj (6)
- oftfrfbf (6)
- erinann (5)
- rolandproud (4)
- icaro-00 (3)
- cywhale (3)
- emma-ozanich (3)
- Cristia7 (3)
- gavinmacaulay (3)
Pull Request Authors
- leewujung (295)
- lsetiawan (153)
- dependabot[bot] (114)
- emiliom (111)
- ctuguinay (82)
- pre-commit-ci[bot] (69)
- b-reyes (59)
- ngkavin (57)
- imranmaj (33)
- praneethratna (27)
- anantmittal (10)
- shivam096 (9)
- anujsinha3 (8)
- ruxandra-valcu (8)
- valentina-s (6)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 4
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Total downloads:
- pypi 310 last-month
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Total dependent packages: 6
(may contain duplicates) -
Total dependent repositories: 9
(may contain duplicates) - Total versions: 107
- Total maintainers: 1
proxy.golang.org: github.com/osoceanacoustics/echopype
- Documentation: https://pkg.go.dev/github.com/osoceanacoustics/echopype#section-documentation
- License: apache-2.0
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Latest release: v0.10.1
published 11 months ago
Rankings
proxy.golang.org: github.com/OSOceanAcoustics/echopype
- Documentation: https://pkg.go.dev/github.com/OSOceanAcoustics/echopype#section-documentation
- License: apache-2.0
-
Latest release: v0.10.1
published 11 months ago
Rankings
pypi.org: echopype
Enhancing the interoperability and scalability in analyzing ocean sonar data
- Homepage: https://github.com/OSOceanAcoustics/echopype
- Documentation: https://echopype.readthedocs.io/
- License: Apache License, Version 2.0
-
Latest release: 0.10.1
published 11 months ago
Rankings
Maintainers (1)
conda-forge.org: echopype
- Homepage: https://github.com/OSOceanAcoustics/echopype
- License: Apache-2.0
-
Latest release: 0.6.3
published over 3 years ago