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vivarium

A python microsimulation framework

https://github.com/ihmeuw/vivarium

Science Score: 46.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ✓
    Committers with academic emails
    19 of 25 committers (76.0%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (9.5%) to scientific vocabulary
Last synced: 7 months ago · JSON representation

Repository

A python microsimulation framework

Basic Info
  • Host: GitHub
  • Owner: ihmeuw
  • License: bsd-3-clause
  • Language: Python
  • Default Branch: main
  • Homepage: http://www.healthdata.org
  • Size: 9.81 MB
Statistics
  • Stars: 47
  • Watchers: 13
  • Forks: 15
  • Open Issues: 6
  • Releases: 126
Created over 8 years ago · Last pushed 7 months ago
Metadata Files
Readme Changelog Contributing License Code of conduct Codeowners Zenodo

README.rst 

========
Vivarium
========

.. image:: https://badge.fury.io/py/vivarium.svg
    :target: https://badge.fury.io/py/vivarium

.. image:: https://github.com/ihmeuw/vivarium/actions/workflows/build.yml/badge.svg?branch=main
    :target: https://github.com/ihmeuw/vivarium
    :alt: Latest Version

.. image:: https://readthedocs.org/projects/vivarium/badge/?version=latest
    :target: https://vivarium.readthedocs.io/en/latest/?badge=latest
    :alt: Latest Docs

.. image:: https://zenodo.org/badge/96817805.svg
   :target: https://zenodo.org/badge/latestdoi/96817805

Vivarium is a simulation framework written using standard scientific Python
tools.

**Vivarium requires Python 3.8-3.11 to run**

You can install ``vivarium`` from PyPI with pip:

  ``> pip install vivarium``

or build it from source with

  ``> git clone https://github.com/ihmeuw/vivarium.git``

  ``> cd vivarium``

  ``> conda create -n ENVIRONMENT_NAME python=3.11``

  ``> pip install -e .[dev]``

This will make the ``vivarium`` library available to python and install a
command-line executable called ``simulate`` that you can use to verify your
installation with

  ``> simulate test``


`Check out the docs! `_
-------------------------------------------------------------------

Owner

  • Name: Institute for Health Metrics and Evaluation
  • Login: ihmeuw
  • Kind: organization
  • Email: ihme@healthdata.org
  • Location: Seattle, WA

Open source public health tools and research projects created by teams at the IHME.

Committers

Last synced: about 3 years ago

All Time
  • Total Commits: 1,994
  • Total Committers: 25
  • Avg Commits per committer: 79.76
  • Development Distribution Score (DDS): 0.657
Top Committers
Name Email Commits
Alec Deason a****d@u****u 684
James Collins c****k@u****u 604
emumford e****d@u****u 169
Cody c****t@u****u 142
Kate Wilson k****7@u****u 128
Rajan Mudambi 1****i@u****m 63
Bob Giansiracusa b****n@u****u 51
A. Flaxman a****e@a****u 29
Matthew Kappel m****l@u****u 23
pandersen13 5****3@u****m 20
Michelle Park h****3@u****u 17
kjells k****s@u****u 17
Kate Wilson 3****n@u****m 15
Abraham Flaxman a****e@u****u 6
rsoren r****n@u****u 5
Steve Bachmeier s****i@u****u 5
Jonathan Joseph j****7@u****u 5
Hussain Jafari h****i@g****m 2
Cody Horst c****2@g****m 2
Hussain Jafari h****i@u****u 2
Kjell Swedin k****s@g****u 1
eeldren e****n@u****u 1
Alec Deason a****d@c****u 1
Alec Deason a****d@c****u 1
Steve Bachmeier 2****r@u****m 1
Committer Domains (Top 20 + Academic)
uw.edu: 15 cn402.ihme.washington.edu: 1 cn351.ihme.washington.edu: 1 gen-uge-submit-p01.hosts.ihme.washington.edu: 1 alum.mit.edu: 1

Issues and Pull Requests

Last synced: 7 months ago

All Time
  • Total issues: 10
  • Total pull requests: 492
  • Average time to close issues: about 1 month
  • Average time to close pull requests: 13 days
  • Total issue authors: 8
  • Total pull request authors: 10
  • Average comments per issue: 0.8
  • Average comments per pull request: 0.1
  • Merged pull requests: 403
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 2
  • Pull requests: 139
  • Average time to close issues: about 20 hours
  • Average time to close pull requests: 2 days
  • Issue authors: 2
  • Pull request authors: 5
  • Average comments per issue: 0.0
  • Average comments per pull request: 0.04
  • Merged pull requests: 112
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • aflaxman (2)
  • collijk (2)
  • patricktnast (1)
  • zmbc (1)
  • NGRhodes (1)
  • ramittal (1)
  • rmudambi (1)
  • resteorts (1)
Pull Request Authors
  • stevebachmeier (168)
  • rmudambi (110)
  • albrja (71)
  • patricktnast (49)
  • collijk (45)
  • hussain-jafari (29)
  • mattkappel (26)
  • zmbc (7)
  • aflaxman (2)
  • beatrixkh (1)
Top Labels
Issue Labels
logging (2)
Pull Request Labels
prototype (2)

Packages

  • Total packages: 1
  • Total downloads:
    • pypi 5,652 last-month
  • Total dependent packages: 4
  • Total dependent repositories: 11
  • Total versions: 156
  • Total maintainers: 7
pypi.org: vivarium

vivarium is a microsimulation framework built on top of the standard scientific python stack.

  • Versions: 156
  • Dependent Packages: 4
  • Dependent Repositories: 11
  • Downloads: 5,652 Last month
Rankings
Dependent packages count: 1.3%
Downloads: 2.7%
Dependent repos count: 4.5%
Average: 5.9%
Stargazers count: 10.2%
Forks count: 11.0%
Maintainers (7)
collijk vivarium hussainjafari mudambi pnast sbachmei albrja
Last synced: 7 months ago

Dependencies

.github/workflows/build.yml actions
  • actions/checkout v3 composite
  • actions/setup-python v4 composite
.github/workflows/deploy.yml actions
  • actions/checkout v3 composite
  • actions/setup-python v4 composite