Science Score: 67.0%
This score indicates how likely this project is to be science-related based on various indicators:
-
✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
✓DOI references
Found 23 DOI reference(s) in README -
✓Academic publication links
Links to: zenodo.org -
○Committers with academic emails
-
○Institutional organization owner
-
○JOSS paper metadata
-
○Scientific vocabulary similarity
Low similarity (17.8%) to scientific vocabulary
Keywords
bird
datalogger
era5
geolocator
migration
pressure-sensor
r
tracker
windspeed
Last synced: 4 months ago
·
JSON representation
·
Repository
Global positioning by atmospheric pressure
Basic Info
- Host: GitHub
- Owner: Rafnuss
- License: gpl-3.0
- Language: R
- Default Branch: master
- Homepage: https://raphaelnussbaumer.com/GeoPressureR
- Size: 421 MB
Statistics
- Stars: 8
- Watchers: 1
- Forks: 3
- Open Issues: 5
- Releases: 25
Topics
bird
datalogger
era5
geolocator
migration
pressure-sensor
r
tracker
windspeed
Created about 4 years ago
· Last pushed 4 months ago
Metadata Files
Readme
Changelog
Contributing
License
Citation
Codemeta
README.Rmd
---
output: github_document
---
```{r, include = FALSE}
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>",
fig.path = "man/figures/README-",
out.width = "100%"
)
```
# GeoPressureR 
[](https://doi.org/10.5281/zenodo.7754457)
[](https://github.com/Rafnuss/GeoPressureR/actions/workflows/R-CMD-check.yaml)
[](https://github.com/Rafnuss/GeoPressureR/actions/workflows/pkgdown.yaml)
[](https://app.codecov.io/gh/Rafnuss/GeoPressureR?branch=master)
[](https://github.com/Rafnuss/GeoPressureR/actions/workflows/lint.yaml)
[](https://lifecycle.r-lib.org/articles/stages.html#stable)
**GeoPressureR** is a R package which help researchers construct the trajectory of a bird equipped with an atmospheric pressure sensor. The package is a direct implementation of methods presented in Nussbaumer et al. ([2023a](https://doi.org/10.1111/2041-210X.14043)) and Nussbaumer et al. ([2023b](https://doi.org/10.1111/2041-210X.14082)).
## Installation
The best way to install the GeoPressureR package is through Github
``` r
# install.packages("pak")
pak::pkg_install("Rafnuss/GeoPressureR")
```
## Learn how to use GeoPressureR
The [GeoPressureManual](https://raphaelnussbaumer.com/GeoPressureManual/) is a great place to start learning about how to use GeoPressureR.
Using the examples, this user guide takes you through each step of the analysis in detail.
## Start your own analysis
Once you are familiar with the workflow of the method and want to start your own study, we suggest you use [GeoPressureTemplate](https://github.com/Rafnuss/GeoPressureTemplate), a [github template repository](https://docs.github.com/en/repositories/creating-and-managing-repositories/creating-a-template-repository) which provides a standard code structure for your analysis.
Using this standardized code structure you will help you on many aspect: code sharing and troubleshooting, data archiving, work reproducibility.
## Cheatsheet
## How to cite?
Make sure to cite the correct reference (R package, papers of the underlying methods and/or user manual) according to your use:
> Nussbaumer, R., & Gravey, M. (2022). *GeoPressureR: Global positioning by atmospheric pressure.* Zenodo. [https://doi.org/10.5281/zenodo.7754457](https://doi.org/10.5281/zenodo.7754457). Available at: [https://github.com/Rafnuss/GeoPressureR](https://github.com/Rafnuss/GeoPressureR)
> Nussbaumer, R., Gravey, M., Briedis, M., & Liechti, F. (2023). Global positioning with animal-borne pressure sensors. *Methods in Ecology and Evolution, 14*(4), 1104–1117. [https://doi.org/10.1111/2041-210X.14043](https://doi.org/10.1111/2041-210X.14043)
> Nussbaumer, R., Gravey, M., Briedis, M., Liechti, F., & Sheldon, D. (2023). Reconstructing bird trajectories from pressure and wind data using a highly optimised hidden Markov model. *Methods in Ecology and Evolution, 14*(4), 1–32. [https://doi.org/10.1111/2041-210X.14082](https://doi.org/10.1111/2041-210X.14082)
> Nussbaumer, R., & Nussbaumer, A. (2024). *GeoPressureManual: Learn how to use GeoPressureR with examples.* Zenodo. [https://doi.org/10.5281/zenodo.10799355](https://doi.org/10.5281/zenodo.10799355). Available at: [https://github.com/Rafnuss/GeoPressureManual](https://github.com/Rafnuss/GeoPressureManual)
Get citation information in R with `citation("GeoPressureR")`.
Owner
- Name: Raphaël
- Login: Rafnuss
- Kind: user
- Location: Altkirch
- Company: Swiss Ornithological Institute
- Website: https://raphaelnussbaumer.com/
- Twitter: rafnuss
- Repositories: 36
- Profile: https://github.com/Rafnuss
Citation (CITATION.cff)
# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
cff-version: 1.2.0
message: 'To cite package "GeoPressureR" in publications use:'
type: software
license: GPL-3.0-or-later
title: 'GeoPressureR: Global Positioning by Atmospheric Pressure'
version: 3.4.3
doi: 10.5281/zenodo.7754457
abstract: R package to determine the position and trajectory of a bird based on light-weight
data-logger measuring at lease atmospheric pressure.
authors:
- family-names: Nussbaumer
given-names: Raphaël
email: rafnuss@gmail.com
orcid: https://orcid.org/0000-0002-8185-1020
- family-names: Gravey
given-names: Mathieu
email: mathieu@mgravey.com
orcid: https://orcid.org/0000-0002-0871-1507
preferred-citation:
type: manual
title: 'GeoPressureR: Global positioning by atmospheric pressure'
authors:
- family-names: Nussbaumer
given-names: Raphael
email: rafnuss@gmail.com
orcid: https://orcid.org/0000-0002-8185-1020
- family-names: Gravey
given-names: Mathieu
email: mathieu@mgravey.com
orcid: https://orcid.org/0000-0002-0871-1507
doi: 10.5281/zenodo.7754457
url: https://github.com/Rafnuss/GeoPressureR
year: '2022'
repository-code: https://github.com/Rafnuss/GeoPressureR
url: https://raphaelnussbaumer.com/GeoPressureR/
contact:
- family-names: Nussbaumer
given-names: Raphaël
email: rafnuss@gmail.com
orcid: https://orcid.org/0000-0002-8185-1020
keywords:
- bird
- datalogger
- era5
- geolocator
- migration
- pressure-sensor
- r
- tracker
- windspeed
references:
- type: article
title: Global positioning with animal-borne pressure sensors
authors:
- family-names: Nussbaumer
given-names: Raphael
email: rafnuss@gmail.com
orcid: https://orcid.org/0000-0002-8185-1020
- family-names: Gravey
given-names: Mathieu
email: mathieu@mgravey.com
orcid: https://orcid.org/0000-0002-0871-1507
- family-names: Briedis
given-names: Martins
email: martins.briedis@vogelwarte.ch
orcid: https://orcid.org/0000-0002-9434-9056
- family-names: Liechti
given-names: Felix
email: felix.liechti@vogelwarte.ch
orcid: https://orcid.org/0000-0001-9473-0837
doi: 10.1111/2041-210X.14043
year: '2023'
journal: Methods in Ecology and Evolution
volume: '14'
issue: '4'
start: 1104-1117
- type: article
title: Reconstructing bird trajectories from pressure and wind data using a highly
optimised hidden Markov model
authors:
- family-names: Nussbaumer
given-names: Raphael
email: rafnuss@gmail.com
orcid: https://orcid.org/0000-0002-8185-1020
- family-names: Gravey
given-names: Mathieu
email: mathieu@mgravey.com
orcid: https://orcid.org/0000-0002-0871-1507
- family-names: Briedis
given-names: Martins
email: martins.briedis@vogelwarte.ch
orcid: https://orcid.org/0000-0002-9434-9056
- family-names: Liechti
given-names: Felix
email: felix.liechti@vogelwarte.ch
orcid: https://orcid.org/0000-0001-9473-0837
- family-names: Sheldon
given-names: Daniel
orcid: https://orcid.org/0000-0002-4257-2432
doi: 10.1111/2041-210X.14082
year: '2023'
journal: Methods in Ecology and Evolution
volume: '14'
issue: '4'
start: '1'
end: '32'
- type: manual
title: 'GeoPressureManual: Learn how to use GeoPressureR with examples.'
authors:
- family-names: Nussbaumer
given-names: Raphael
email: rafnuss@gmail.com
orcid: https://orcid.org/0000-0002-8185-1020
- family-names: Nussbaumer
given-names: Améline
email: ameline.nussbaumer@gmail.com
orcid: https://orcid.org/0000-0003-1308-4154
doi: 10.5281/zenodo.10799355
url: https://github.com/Rafnuss/GeoPressureManual
year: '2024'
- type: software
title: 'R: A Language and Environment for Statistical Computing'
notes: Depends
url: https://www.R-project.org/
authors:
- name: R Core Team
institution:
name: R Foundation for Statistical Computing
address: Vienna, Austria
year: '2025'
version: '>= 4.1.0'
- type: software
title: cli
abstract: 'cli: Helpers for Developing Command Line Interfaces'
notes: Imports
url: https://cli.r-lib.org
repository: https://CRAN.R-project.org/package=cli
authors:
- family-names: Csárdi
given-names: Gábor
email: gabor@posit.co
year: '2025'
doi: 10.32614/CRAN.package.cli
- type: software
title: config
abstract: 'config: Manage Environment Specific Configuration Values'
notes: Imports
url: https://rstudio.github.io/config/
repository: https://CRAN.R-project.org/package=config
authors:
- family-names: Allaire
given-names: JJ
email: jj@rstudio.com
year: '2025'
doi: 10.32614/CRAN.package.config
- type: software
title: ecmwfr
abstract: 'ecmwfr: Interface to ''ECMWF'' and ''CDS'' Data Web Services'
notes: Imports
url: https://github.com/bluegreen-labs/ecmwfr
repository: https://CRAN.R-project.org/package=ecmwfr
authors:
- family-names: Hufkens
given-names: Koen
email: koen.hufkens@gmail.com
orcid: https://orcid.org/0000-0002-5070-8109
year: '2025'
doi: 10.32614/CRAN.package.ecmwfr
version: '>= 2.0.0'
- type: software
title: EBImage
abstract: 'EBImage: Image processing and analysis toolbox for R'
notes: Imports
url: https://github.com/aoles/EBImage
repository: https://bioconductor.org/
authors:
- family-names: Oleś
given-names: Andrzej
- family-names: Pau
given-names: Gregoire
- family-names: Smith
given-names: Mike
- family-names: Sklyar
given-names: Oleg
- family-names: Huber
given-names: Wolfgang
- family-names: Barry
given-names: with contributions from Joseph
- family-names: Marais
given-names: Philip A.
year: '2025'
doi: 10.18129/B9.bioc.EBImage
- type: software
title: future
abstract: 'future: Unified Parallel and Distributed Processing in R for Everyone'
notes: Imports
url: https://future.futureverse.org
repository: https://CRAN.R-project.org/package=future
authors:
- family-names: Bengtsson
given-names: Henrik
email: henrikb@braju.com
orcid: https://orcid.org/0000-0002-7579-5165
year: '2025'
doi: 10.32614/CRAN.package.future
- type: software
title: geosphere
abstract: 'geosphere: Spherical Trigonometry'
notes: Imports
url: https://github.com/rspatial/geosphere/issues/
repository: https://CRAN.R-project.org/package=geosphere
authors:
- family-names: Hijmans
given-names: Robert J.
email: r.hijmans@gmail.com
year: '2025'
doi: 10.32614/CRAN.package.geosphere
- type: software
title: ggplot2
abstract: 'ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics'
notes: Imports
url: https://ggplot2.tidyverse.org
repository: https://CRAN.R-project.org/package=ggplot2
authors:
- family-names: Wickham
given-names: Hadley
email: hadley@posit.co
orcid: https://orcid.org/0000-0003-4757-117X
- family-names: Chang
given-names: Winston
orcid: https://orcid.org/0000-0002-1576-2126
- family-names: Henry
given-names: Lionel
- family-names: Pedersen
given-names: Thomas Lin
email: thomas.pedersen@posit.co
orcid: https://orcid.org/0000-0002-5147-4711
- family-names: Takahashi
given-names: Kohske
- family-names: Wilke
given-names: Claus
orcid: https://orcid.org/0000-0002-7470-9261
- family-names: Woo
given-names: Kara
orcid: https://orcid.org/0000-0002-5125-4188
- family-names: Yutani
given-names: Hiroaki
orcid: https://orcid.org/0000-0002-3385-7233
- family-names: Dunnington
given-names: Dewey
orcid: https://orcid.org/0000-0002-9415-4582
- family-names: Brand
given-names: Teun
name-particle: van den
orcid: https://orcid.org/0000-0002-9335-7468
year: '2025'
doi: 10.32614/CRAN.package.ggplot2
- type: software
title: glue
abstract: 'glue: Interpreted String Literals'
notes: Imports
url: https://glue.tidyverse.org/
repository: https://CRAN.R-project.org/package=glue
authors:
- family-names: Hester
given-names: Jim
orcid: https://orcid.org/0000-0002-2739-7082
- family-names: Bryan
given-names: Jennifer
email: jenny@posit.co
orcid: https://orcid.org/0000-0002-6983-2759
year: '2025'
doi: 10.32614/CRAN.package.glue
- type: software
title: graphics
abstract: 'R: A Language and Environment for Statistical Computing'
notes: Imports
authors:
- name: R Core Team
institution:
name: R Foundation for Statistical Computing
address: Vienna, Austria
year: '2025'
- type: software
title: httr2
abstract: 'httr2: Perform HTTP Requests and Process the Responses'
notes: Imports
url: https://httr2.r-lib.org
repository: https://CRAN.R-project.org/package=httr2
authors:
- family-names: Wickham
given-names: Hadley
email: hadley@posit.co
year: '2025'
doi: 10.32614/CRAN.package.httr2
version: '>= 1.0.0'
- type: software
title: jsonlite
abstract: 'jsonlite: A Simple and Robust JSON Parser and Generator for R'
notes: Imports
url: https://jeroen.r-universe.dev/jsonlite
repository: https://CRAN.R-project.org/package=jsonlite
authors:
- family-names: Ooms
given-names: Jeroen
email: jeroenooms@gmail.com
orcid: https://orcid.org/0000-0002-4035-0289
year: '2025'
doi: 10.32614/CRAN.package.jsonlite
- type: software
title: leaflet
abstract: 'leaflet: Create Interactive Web Maps with the JavaScript ''Leaflet''
Library'
notes: Imports
url: https://rstudio.github.io/leaflet/
repository: https://CRAN.R-project.org/package=leaflet
authors:
- family-names: Cheng
given-names: Joe
email: joe@posit.co
- family-names: Schloerke
given-names: Barret
email: barret@posit.co
orcid: https://orcid.org/0000-0001-9986-114X
- family-names: Karambelkar
given-names: Bhaskar
- family-names: Xie
given-names: Yihui
year: '2025'
doi: 10.32614/CRAN.package.leaflet
version: '>= 2.2.0'
- type: software
title: lifecycle
abstract: 'lifecycle: Manage the Life Cycle of your Package Functions'
notes: Imports
url: https://lifecycle.r-lib.org/
repository: https://CRAN.R-project.org/package=lifecycle
authors:
- family-names: Henry
given-names: Lionel
email: lionel@posit.co
- family-names: Wickham
given-names: Hadley
email: hadley@posit.co
orcid: https://orcid.org/0000-0003-4757-117X
year: '2025'
doi: 10.32614/CRAN.package.lifecycle
- type: software
title: Matrix
abstract: 'Matrix: Sparse and Dense Matrix Classes and Methods'
notes: Imports
url: https://Matrix.R-forge.R-project.org
repository: https://CRAN.R-project.org/package=Matrix
authors:
- family-names: Bates
given-names: Douglas
orcid: https://orcid.org/0000-0001-8316-9503
- family-names: Maechler
given-names: Martin
email: mmaechler+Matrix@gmail.com
orcid: https://orcid.org/0000-0002-8685-9910
- family-names: Jagan
given-names: Mikael
orcid: https://orcid.org/0000-0002-3542-2938
year: '2025'
doi: 10.32614/CRAN.package.Matrix
- type: software
title: methods
abstract: 'R: A Language and Environment for Statistical Computing'
notes: Imports
authors:
- name: R Core Team
institution:
name: R Foundation for Statistical Computing
address: Vienna, Austria
year: '2025'
- type: software
title: ncdf4
abstract: 'ncdf4: Interface to Unidata netCDF (Version 4 or Earlier) Format Data
Files'
notes: Imports
url: https://cirrus.ucsd.edu/~pierce/ncdf/
repository: https://CRAN.R-project.org/package=ncdf4
authors:
- family-names: Pierce
given-names: David
email: dpierce@ucsd.edu
orcid: https://orcid.org/0000-0002-2453-9030
year: '2025'
doi: 10.32614/CRAN.package.ncdf4
- type: software
title: plotly
abstract: 'plotly: Create Interactive Web Graphics via ''plotly.js'''
notes: Imports
url: https://plotly-r.com
repository: https://CRAN.R-project.org/package=plotly
authors:
- family-names: Sievert
given-names: Carson
email: cpsievert1@gmail.com
orcid: https://orcid.org/0000-0002-4958-2844
- family-names: Parmer
given-names: Chris
email: chris@plot.ly
- family-names: Hocking
given-names: Toby
email: tdhock5@gmail.com
- family-names: Chamberlain
given-names: Scott
email: myrmecocystus@gmail.com
- family-names: Ram
given-names: Karthik
email: karthik.ram@gmail.com
- family-names: Corvellec
given-names: Marianne
email: marianne.corvellec@igdore.org
orcid: https://orcid.org/0000-0002-1994-3581
- family-names: Despouy
given-names: Pedro
email: pedro@plot.ly
year: '2025'
doi: 10.32614/CRAN.package.plotly
- type: software
title: pracma
abstract: 'pracma: Practical Numerical Math Functions'
notes: Imports
repository: https://CRAN.R-project.org/package=pracma
authors:
- family-names: Borchers
given-names: Hans W.
email: hwborchers@googlemail.com
year: '2025'
doi: 10.32614/CRAN.package.pracma
- type: software
title: RColorBrewer
abstract: 'RColorBrewer: ColorBrewer Palettes'
notes: Imports
repository: https://CRAN.R-project.org/package=RColorBrewer
authors:
- family-names: Neuwirth
given-names: Erich
email: erich.neuwirth@univie.ac.at
year: '2025'
doi: 10.32614/CRAN.package.RColorBrewer
- type: software
title: stats
abstract: 'R: A Language and Environment for Statistical Computing'
notes: Imports
authors:
- name: R Core Team
institution:
name: R Foundation for Statistical Computing
address: Vienna, Austria
year: '2025'
- type: software
title: suntools
abstract: 'suntools: Calculate Sun Position, Sunrise, Sunset, Solar Noon and Twilight'
notes: Imports
url: https://github.com/adokter/suntools/
repository: https://CRAN.R-project.org/package=suntools
authors:
- family-names: Bivand
given-names: Roger
email: Roger.Bivand@nhh.no
orcid: https://orcid.org/0000-0003-2392-6140
- family-names: Luque
given-names: Sebastian
year: '2025'
doi: 10.32614/CRAN.package.suntools
- type: software
title: terra
abstract: 'terra: Spatial Data Analysis'
notes: Imports
url: https://rspatial.org/
repository: https://CRAN.R-project.org/package=terra
authors:
- family-names: Hijmans
given-names: Robert J.
email: r.hijmans@gmail.com
orcid: https://orcid.org/0000-0001-5872-2872
year: '2025'
doi: 10.32614/CRAN.package.terra
- type: software
title: utils
abstract: 'R: A Language and Environment for Statistical Computing'
notes: Imports
authors:
- name: R Core Team
institution:
name: R Foundation for Statistical Computing
address: Vienna, Austria
year: '2025'
- type: software
title: assertthat
abstract: 'assertthat: Easy Pre and Post Assertions'
notes: Suggests
repository: https://CRAN.R-project.org/package=assertthat
authors:
- family-names: Wickham
given-names: Hadley
email: hadley@rstudio.com
year: '2025'
doi: 10.32614/CRAN.package.assertthat
- type: software
title: BiocManager
abstract: 'BiocManager: Access the Bioconductor Project Package Repository'
notes: Suggests
url: https://bioconductor.github.io/BiocManager/
repository: https://CRAN.R-project.org/package=BiocManager
authors:
- family-names: Morgan
given-names: Martin
email: martin.morgan@roswellpark.org
orcid: https://orcid.org/0000-0002-5874-8148
- family-names: Ramos
given-names: Marcel
email: marcel.ramos@sph.cuny.edu
orcid: https://orcid.org/0000-0002-3242-0582
year: '2025'
doi: 10.32614/CRAN.package.BiocManager
- type: software
title: covr
abstract: 'covr: Test Coverage for Packages'
notes: Suggests
url: https://covr.r-lib.org
repository: https://CRAN.R-project.org/package=covr
authors:
- family-names: Hester
given-names: Jim
email: james.f.hester@gmail.com
year: '2025'
doi: 10.32614/CRAN.package.covr
- type: software
title: knitr
abstract: 'knitr: A General-Purpose Package for Dynamic Report Generation in R'
notes: Suggests
url: https://yihui.org/knitr/
repository: https://CRAN.R-project.org/package=knitr
authors:
- family-names: Xie
given-names: Yihui
email: xie@yihui.name
orcid: https://orcid.org/0000-0003-0645-5666
year: '2025'
doi: 10.32614/CRAN.package.knitr
- type: software
title: leaflet.extras
abstract: 'leaflet.extras: Extra Functionality for ''leaflet'' Package'
notes: Suggests
url: https://trafficonese.github.io/leaflet.extras/
repository: https://CRAN.R-project.org/package=leaflet.extras
authors:
- family-names: Gatscha
given-names: Sebastian
email: sebastian_gatscha@gmx.at
- family-names: Karambelkar
given-names: Bhaskar
email: bhaskarvk@gmail.com
- family-names: Schloerke
given-names: Barret
email: barret@rstudio.com
year: '2025'
doi: 10.32614/CRAN.package.leaflet.extras
- type: software
title: leaflet.providers
abstract: 'leaflet.providers: Leaflet Providers'
notes: Suggests
url: https://rstudio.github.io/leaflet.providers/
repository: https://CRAN.R-project.org/package=leaflet.providers
authors:
- family-names: Huang
given-names: Leslie
email: lesliehuang@nyu.edu
year: '2025'
doi: 10.32614/CRAN.package.leaflet.providers
- type: software
title: maps
abstract: 'maps: Draw Geographical Maps'
notes: Suggests
url: https://github.com/adeckmyn/maps
repository: https://CRAN.R-project.org/package=maps
authors:
- family-names: Becker
given-names: Richard A.
- family-names: Wilks
given-names: Allan R.
- family-names: Brownrigg
given-names: Ray
- family-names: Minka
given-names: Thomas P.
- family-names: Deckmyn
given-names: Alex
email: alex.deckmyn@meteo.be
orcid: https://orcid.org/0009-0002-2010-8310
year: '2025'
doi: 10.32614/CRAN.package.maps
- type: software
title: readxl
abstract: 'readxl: Read Excel Files'
notes: Suggests
url: https://readxl.tidyverse.org
repository: https://CRAN.R-project.org/package=readxl
authors:
- family-names: Wickham
given-names: Hadley
email: hadley@posit.co
orcid: https://orcid.org/0000-0003-4757-117X
- family-names: Bryan
given-names: Jennifer
email: jenny@posit.co
orcid: https://orcid.org/0000-0002-6983-2759
year: '2025'
doi: 10.32614/CRAN.package.readxl
- type: software
title: shiny
abstract: 'shiny: Web Application Framework for R'
notes: Suggests
url: https://shiny.posit.co/
repository: https://CRAN.R-project.org/package=shiny
authors:
- family-names: Chang
given-names: Winston
email: winston@posit.co
orcid: https://orcid.org/0000-0002-1576-2126
- family-names: Cheng
given-names: Joe
email: joe@posit.co
- family-names: Allaire
given-names: JJ
email: jj@posit.co
- family-names: Sievert
given-names: Carson
email: carson@posit.co
orcid: https://orcid.org/0000-0002-4958-2844
- family-names: Schloerke
given-names: Barret
email: barret@posit.co
orcid: https://orcid.org/0000-0001-9986-114X
- family-names: Xie
given-names: Yihui
email: yihui@posit.co
- family-names: Allen
given-names: Jeff
- family-names: McPherson
given-names: Jonathan
email: jonathan@posit.co
- family-names: Dipert
given-names: Alan
- family-names: Borges
given-names: Barbara
year: '2025'
doi: 10.32614/CRAN.package.shiny
- type: software
title: shinyjs
abstract: 'shinyjs: Easily Improve the User Experience of Your Shiny Apps in Seconds'
notes: Suggests
url: https://deanattali.com/shinyjs/
repository: https://CRAN.R-project.org/package=shinyjs
authors:
- family-names: Attali
given-names: Dean
email: daattali@gmail.com
orcid: https://orcid.org/0000-0002-5645-3493
year: '2025'
doi: 10.32614/CRAN.package.shinyjs
- type: software
title: shinyWidgets
abstract: 'shinyWidgets: Custom Inputs Widgets for Shiny'
notes: Suggests
url: https://dreamrs.github.io/shinyWidgets/
repository: https://CRAN.R-project.org/package=shinyWidgets
authors:
- family-names: Perrier
given-names: Victor
email: victor.perrier@dreamrs.fr
- family-names: Meyer
given-names: Fanny
- family-names: Granjon
given-names: David
year: '2025'
doi: 10.32614/CRAN.package.shinyWidgets
- type: software
title: testthat
abstract: 'testthat: Unit Testing for R'
notes: Suggests
url: https://testthat.r-lib.org
repository: https://CRAN.R-project.org/package=testthat
authors:
- family-names: Wickham
given-names: Hadley
email: hadley@posit.co
year: '2025'
doi: 10.32614/CRAN.package.testthat
version: '>= 3.0.0'
- type: software
title: withr
abstract: 'withr: Run Code ''With'' Temporarily Modified Global State'
notes: Suggests
url: https://withr.r-lib.org
repository: https://CRAN.R-project.org/package=withr
authors:
- family-names: Hester
given-names: Jim
- family-names: Henry
given-names: Lionel
email: lionel@posit.co
- family-names: Müller
given-names: Kirill
email: krlmlr+r@mailbox.org
- family-names: Ushey
given-names: Kevin
email: kevinushey@gmail.com
- family-names: Wickham
given-names: Hadley
email: hadley@posit.co
- family-names: Chang
given-names: Winston
year: '2025'
doi: 10.32614/CRAN.package.withr
CodeMeta (codemeta.json)
{
"@context": "https://doi.org/10.5063/schema/codemeta-2.0",
"@type": "SoftwareSourceCode",
"identifier": "GeoPressureR",
"description": "R package to determine the position and trajectory of a bird based on light-weight data-logger measuring at lease atmospheric pressure.",
"name": "GeoPressureR: Global Positioning by Atmospheric Pressure",
"relatedLink": "https://raphaelnussbaumer.com/GeoPressureR/",
"codeRepository": "https://github.com/Rafnuss/GeoPressureR",
"issueTracker": "https://github.com/Rafnuss/GeoPressureR/issues",
"license": "https://spdx.org/licenses/GPL-3.0",
"version": "3.1.2",
"programmingLanguage": {
"@type": "ComputerLanguage",
"name": "R",
"url": "https://r-project.org"
},
"runtimePlatform": "R version 4.3.1 (2023-06-16)",
"author": [
{
"@type": "Person",
"givenName": "Raphal",
"familyName": "Nussbaumer",
"email": "rafnuss@gmail.com",
"@id": "https://orcid.org/0000-0002-8185-1020"
},
{
"@type": "Person",
"givenName": "Mathieu",
"familyName": "Gravey",
"email": "mathieu@mgravey.com",
"@id": "https://orcid.org/0000-0002-0871-1507"
}
],
"maintainer": [
{
"@type": "Person",
"givenName": "Raphal",
"familyName": "Nussbaumer",
"email": "rafnuss@gmail.com",
"@id": "https://orcid.org/0000-0002-8185-1020"
}
],
"softwareSuggestions": [
{
"@type": "SoftwareApplication",
"identifier": "BiocManager",
"name": "BiocManager",
"provider": {
"@id": "https://cran.r-project.org",
"@type": "Organization",
"name": "Comprehensive R Archive Network (CRAN)",
"url": "https://cran.r-project.org"
},
"sameAs": "https://CRAN.R-project.org/package=BiocManager"
},
{
"@type": "SoftwareApplication",
"identifier": "knitr",
"name": "knitr",
"provider": {
"@id": "https://cran.r-project.org",
"@type": "Organization",
"name": "Comprehensive R Archive Network (CRAN)",
"url": "https://cran.r-project.org"
},
"sameAs": "https://CRAN.R-project.org/package=knitr"
},
{
"@type": "SoftwareApplication",
"identifier": "testthat",
"name": "testthat",
"version": ">= 3.0.0",
"provider": {
"@id": "https://cran.r-project.org",
"@type": "Organization",
"name": "Comprehensive R Archive Network (CRAN)",
"url": "https://cran.r-project.org"
},
"sameAs": "https://CRAN.R-project.org/package=testthat"
},
{
"@type": "SoftwareApplication",
"identifier": "leaflet.extras",
"name": "leaflet.extras",
"provider": {
"@id": "https://cran.r-project.org",
"@type": "Organization",
"name": "Comprehensive R Archive Network (CRAN)",
"url": "https://cran.r-project.org"
},
"sameAs": "https://CRAN.R-project.org/package=leaflet.extras"
},
{
"@type": "SoftwareApplication",
"identifier": "shinyjs",
"name": "shinyjs",
"provider": {
"@id": "https://cran.r-project.org",
"@type": "Organization",
"name": "Comprehensive R Archive Network (CRAN)",
"url": "https://cran.r-project.org"
},
"sameAs": "https://CRAN.R-project.org/package=shinyjs"
},
{
"@type": "SoftwareApplication",
"identifier": "shiny",
"name": "shiny",
"provider": {
"@id": "https://cran.r-project.org",
"@type": "Organization",
"name": "Comprehensive R Archive Network (CRAN)",
"url": "https://cran.r-project.org"
},
"sameAs": "https://CRAN.R-project.org/package=shiny"
},
{
"@type": "SoftwareApplication",
"identifier": "RColorBrewer",
"name": "RColorBrewer",
"provider": {
"@id": "https://cran.r-project.org",
"@type": "Organization",
"name": "Comprehensive R Archive Network (CRAN)",
"url": "https://cran.r-project.org"
},
"sameAs": "https://CRAN.R-project.org/package=RColorBrewer"
},
{
"@type": "SoftwareApplication",
"identifier": "readxl",
"name": "readxl",
"provider": {
"@id": "https://cran.r-project.org",
"@type": "Organization",
"name": "Comprehensive R Archive Network (CRAN)",
"url": "https://cran.r-project.org"
},
"sameAs": "https://CRAN.R-project.org/package=readxl"
},
{
"@type": "SoftwareApplication",
"identifier": "shinyWidgets",
"name": "shinyWidgets",
"provider": {
"@id": "https://cran.r-project.org",
"@type": "Organization",
"name": "Comprehensive R Archive Network (CRAN)",
"url": "https://cran.r-project.org"
},
"sameAs": "https://CRAN.R-project.org/package=shinyWidgets"
},
{
"@type": "SoftwareApplication",
"identifier": "covr",
"name": "covr",
"provider": {
"@id": "https://cran.r-project.org",
"@type": "Organization",
"name": "Comprehensive R Archive Network (CRAN)",
"url": "https://cran.r-project.org"
},
"sameAs": "https://CRAN.R-project.org/package=covr"
},
{
"@type": "SoftwareApplication",
"identifier": "maps",
"name": "maps",
"provider": {
"@id": "https://cran.r-project.org",
"@type": "Organization",
"name": "Comprehensive R Archive Network (CRAN)",
"url": "https://cran.r-project.org"
},
"sameAs": "https://CRAN.R-project.org/package=maps"
}
],
"softwareRequirements": {
"1": {
"@type": "SoftwareApplication",
"identifier": "R",
"name": "R",
"version": ">= 4.1.0"
},
"2": {
"@type": "SoftwareApplication",
"identifier": "assertthat",
"name": "assertthat",
"provider": {
"@id": "https://cran.r-project.org",
"@type": "Organization",
"name": "Comprehensive R Archive Network (CRAN)",
"url": "https://cran.r-project.org"
},
"sameAs": "https://CRAN.R-project.org/package=assertthat"
},
"3": {
"@type": "SoftwareApplication",
"identifier": "EBImage",
"name": "EBImage",
"provider": {
"@id": "https://www.bioconductor.org",
"@type": "Organization",
"name": "Bioconductor",
"url": "https://www.bioconductor.org"
},
"sameAs": "https://bioconductor.org/packages/release/bioc/html/EBImage.html"
},
"4": {
"@type": "SoftwareApplication",
"identifier": "cli",
"name": "cli",
"provider": {
"@id": "https://cran.r-project.org",
"@type": "Organization",
"name": "Comprehensive R Archive Network (CRAN)",
"url": "https://cran.r-project.org"
},
"sameAs": "https://CRAN.R-project.org/package=cli"
},
"5": {
"@type": "SoftwareApplication",
"identifier": "ecmwfr",
"name": "ecmwfr",
"provider": {
"@id": "https://cran.r-project.org",
"@type": "Organization",
"name": "Comprehensive R Archive Network (CRAN)",
"url": "https://cran.r-project.org"
},
"sameAs": "https://CRAN.R-project.org/package=ecmwfr"
},
"6": {
"@type": "SoftwareApplication",
"identifier": "future",
"name": "future",
"provider": {
"@id": "https://cran.r-project.org",
"@type": "Organization",
"name": "Comprehensive R Archive Network (CRAN)",
"url": "https://cran.r-project.org"
},
"sameAs": "https://CRAN.R-project.org/package=future"
},
"7": {
"@type": "SoftwareApplication",
"identifier": "geosphere",
"name": "geosphere",
"provider": {
"@id": "https://cran.r-project.org",
"@type": "Organization",
"name": "Comprehensive R Archive Network (CRAN)",
"url": "https://cran.r-project.org"
},
"sameAs": "https://CRAN.R-project.org/package=geosphere"
},
"8": {
"@type": "SoftwareApplication",
"identifier": "glue",
"name": "glue",
"provider": {
"@id": "https://cran.r-project.org",
"@type": "Organization",
"name": "Comprehensive R Archive Network (CRAN)",
"url": "https://cran.r-project.org"
},
"sameAs": "https://CRAN.R-project.org/package=glue"
},
"9": {
"@type": "SoftwareApplication",
"identifier": "ggplot2",
"name": "ggplot2",
"provider": {
"@id": "https://cran.r-project.org",
"@type": "Organization",
"name": "Comprehensive R Archive Network (CRAN)",
"url": "https://cran.r-project.org"
},
"sameAs": "https://CRAN.R-project.org/package=ggplot2"
},
"10": {
"@type": "SoftwareApplication",
"identifier": "httr",
"name": "httr",
"provider": {
"@id": "https://cran.r-project.org",
"@type": "Organization",
"name": "Comprehensive R Archive Network (CRAN)",
"url": "https://cran.r-project.org"
},
"sameAs": "https://CRAN.R-project.org/package=httr"
},
"11": {
"@type": "SoftwareApplication",
"identifier": "leaflet",
"name": "leaflet",
"provider": {
"@id": "https://cran.r-project.org",
"@type": "Organization",
"name": "Comprehensive R Archive Network (CRAN)",
"url": "https://cran.r-project.org"
},
"sameAs": "https://CRAN.R-project.org/package=leaflet"
},
"12": {
"@type": "SoftwareApplication",
"identifier": "plotly",
"name": "plotly",
"provider": {
"@id": "https://cran.r-project.org",
"@type": "Organization",
"name": "Comprehensive R Archive Network (CRAN)",
"url": "https://cran.r-project.org"
},
"sameAs": "https://CRAN.R-project.org/package=plotly"
},
"13": {
"@type": "SoftwareApplication",
"identifier": "jsonlite",
"name": "jsonlite",
"provider": {
"@id": "https://cran.r-project.org",
"@type": "Organization",
"name": "Comprehensive R Archive Network (CRAN)",
"url": "https://cran.r-project.org"
},
"sameAs": "https://CRAN.R-project.org/package=jsonlite"
},
"14": {
"@type": "SoftwareApplication",
"identifier": "Matrix",
"name": "Matrix",
"provider": {
"@id": "https://cran.r-project.org",
"@type": "Organization",
"name": "Comprehensive R Archive Network (CRAN)",
"url": "https://cran.r-project.org"
},
"sameAs": "https://CRAN.R-project.org/package=Matrix"
},
"15": {
"@type": "SoftwareApplication",
"identifier": "methods",
"name": "methods"
},
"16": {
"@type": "SoftwareApplication",
"identifier": "ncdf4",
"name": "ncdf4",
"provider": {
"@id": "https://cran.r-project.org",
"@type": "Organization",
"name": "Comprehensive R Archive Network (CRAN)",
"url": "https://cran.r-project.org"
},
"sameAs": "https://CRAN.R-project.org/package=ncdf4"
},
"17": {
"@type": "SoftwareApplication",
"identifier": "pracma",
"name": "pracma",
"provider": {
"@id": "https://cran.r-project.org",
"@type": "Organization",
"name": "Comprehensive R Archive Network (CRAN)",
"url": "https://cran.r-project.org"
},
"sameAs": "https://CRAN.R-project.org/package=pracma"
},
"18": {
"@type": "SoftwareApplication",
"identifier": "readr",
"name": "readr",
"provider": {
"@id": "https://cran.r-project.org",
"@type": "Organization",
"name": "Comprehensive R Archive Network (CRAN)",
"url": "https://cran.r-project.org"
},
"sameAs": "https://CRAN.R-project.org/package=readr"
},
"19": {
"@type": "SoftwareApplication",
"identifier": "stats",
"name": "stats"
},
"20": {
"@type": "SoftwareApplication",
"identifier": "terra",
"name": "terra",
"provider": {
"@id": "https://cran.r-project.org",
"@type": "Organization",
"name": "Comprehensive R Archive Network (CRAN)",
"url": "https://cran.r-project.org"
},
"sameAs": "https://CRAN.R-project.org/package=terra"
},
"21": {
"@type": "SoftwareApplication",
"identifier": "utils",
"name": "utils"
},
"SystemRequirements": null
},
"fileSize": "7630.793KB",
"citation": [
{
"@type": "ScholarlyArticle",
"datePublished": "2023",
"author": [
{
"@type": "Person",
"givenName": "Raphael",
"familyName": "Nussbaumer",
"email": "rafnuss@gmail.com",
"@id": "https://orcid.org/0000-0002-8185-1020"
},
{
"@type": "Person",
"givenName": "Mathieu",
"familyName": "Gravey",
"email": "mathieu@mgravey.com",
"@id": "https://orcid.org/0000-0002-0871-1507"
},
{
"@type": "Person",
"givenName": "Martins",
"familyName": "Briedis",
"email": "martins.briedis@vogelwarte.ch ",
"@id": "https://orcid.org/0000-0002-9434-9056"
},
{
"@type": "Person",
"givenName": "Felix",
"familyName": "Liechti",
"email": "felix.liechti@vogelwarte.ch",
"@id": "https://orcid.org/0000-0001-9473-0837"
}
],
"name": "Global positioning with animal-borne pressure sensors",
"identifier": "10.1111/2041-210X.14043",
"url": "https://doi.org/10.1111/2041-210X.14043",
"pagination": "1104-1117",
"@id": "https://doi.org/10.1111/2041-210X.14043",
"sameAs": "https://doi.org/10.1111/2041-210X.14043",
"isPartOf": {
"@type": "PublicationIssue",
"issueNumber": "4",
"datePublished": "2023",
"isPartOf": {
"@type": [
"PublicationVolume",
"Periodical"
],
"volumeNumber": "14",
"name": "Methods in Ecology and Evolution"
}
}
},
{
"@type": "ScholarlyArticle",
"datePublished": "2023",
"author": [
{
"@type": "Person",
"givenName": "Raphael",
"familyName": "Nussbaumer",
"email": "rafnuss@gmail.com",
"@id": "https://orcid.org/0000-0002-8185-1020"
},
{
"@type": "Person",
"givenName": "Mathieu",
"familyName": "Gravey",
"email": "mathieu@mgravey.com",
"@id": "https://orcid.org/0000-0002-0871-1507"
},
{
"@type": "Person",
"givenName": "Martins",
"familyName": "Briedis",
"email": "martins.briedis@vogelwarte.ch ",
"@id": "https://orcid.org/0000-0002-9434-9056"
},
{
"@type": "Person",
"givenName": "Felix",
"familyName": "Liechti",
"email": "felix.liechti@vogelwarte.ch",
"@id": "https://orcid.org/0000-0001-9473-0837"
},
{
"@type": "Person",
"givenName": "Daniel",
"familyName": "Sheldon",
"@id": "https://orcid.org/0000-0002-4257-2432"
}
],
"name": "Reconstructing bird trajectories from pressure and wind data using a highly optimised hidden Markov model",
"identifier": "10.1111/2041-210X.14082",
"url": "https://doi.org/10.1111/2041-210X.14082",
"pagination": "1--32",
"@id": "https://doi.org/10.1111/2041-210X.14082",
"sameAs": "https://doi.org/10.1111/2041-210X.14082",
"isPartOf": {
"@type": "PublicationIssue",
"issueNumber": "4",
"datePublished": "2023",
"isPartOf": {
"@type": [
"PublicationVolume",
"Periodical"
],
"volumeNumber": "14",
"name": "Methods in Ecology and Evolution"
}
}
},
{
"@type": "SoftwareSourceCode",
"datePublished": "2022",
"author": [
{
"@type": "Person",
"givenName": "Raphael",
"familyName": "Nussbaumer",
"email": "rafnuss@gmail.com",
"@id": "https://orcid.org/0000-0002-8185-1020"
},
{
"@type": "Person",
"givenName": "Mathieu",
"familyName": "Gravey",
"email": "mathieu@mgravey.com",
"@id": "https://orcid.org/0000-0002-0871-1507"
}
],
"name": "GeoPressureR: Global positioning by atmospheric pressure",
"url": "https://github.com/Rafnuss/GeoPressureR"
}
],
"releaseNotes": "https://github.com/Rafnuss/GeoPressureR/blob/master/NEWS.md",
"readme": "https://github.com/Rafnuss/GeoPressureR/blob/master/README.md",
"contIntegration": [
"https://github.com/Rafnuss/GeoPressureR/actions",
"https://github.com/Rafnuss/GeoPressureR/actions/workflows/pkgdown.yaml",
"https://app.codecov.io/gh/Rafnuss/GeoPressureR?branch=master",
"https://github.com/Rafnuss/GeoPressureR/actions/workflows/lint.yaml"
],
"developmentStatus": "https://www.repostatus.org/#active",
"keywords": [
"r",
"era5",
"datalogger",
"bird",
"migration",
"windspeed",
"pressure-sensor",
"geolocator",
"tracker"
]
}GitHub Events
Total
- Create event: 22
- Release event: 10
- Issues event: 9
- Delete event: 10
- Issue comment event: 2
- Push event: 95
- Pull request review event: 4
- Pull request review comment event: 5
- Pull request event: 19
- Fork event: 1
Last Year
- Create event: 24
- Release event: 11
- Issues event: 9
- Delete event: 10
- Issue comment event: 2
- Push event: 96
- Pull request review event: 4
- Pull request review comment event: 5
- Pull request event: 19
- Fork event: 1
Committers
Last synced: 5 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| rafnuss | r****s@g****m | 935 |
| Améline Nussbaumer | a****r@g****m | 12 |
| Pablo Capilla-Lasheras | p****a@g****m | 1 |
| Jacob B. Socolar | j****r@g****m | 1 |
Issues and Pull Requests
Last synced: 4 months ago
All Time
- Total issues: 80
- Total pull requests: 67
- Average time to close issues: about 1 month
- Average time to close pull requests: 4 days
- Total issue authors: 2
- Total pull request authors: 3
- Average comments per issue: 0.39
- Average comments per pull request: 0.03
- Merged pull requests: 55
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 5
- Pull requests: 25
- Average time to close issues: about 20 hours
- Average time to close pull requests: 8 days
- Issue authors: 1
- Pull request authors: 2
- Average comments per issue: 0.0
- Average comments per pull request: 0.0
- Merged pull requests: 20
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- Rafnuss (78)
- grhyne (2)
Pull Request Authors
- Rafnuss (64)
- PabloCapilla (2)
- jsocolar (1)
Top Labels
Issue Labels
enhancement (11)
documentation (5)
help wanted (3)
bug (3)
wontfix (3)
duplicate (1)
Pull Request Labels
Dependencies
DESCRIPTION
cran
- R >= 3.5.0 depends
- EBImage * imports
- Matrix * imports
- future * imports
- geosphere * imports
- httr * imports
- jsonlite * imports
- pracma * imports
- raster * imports
- stats * imports
- utils * imports
- BiocManager * suggests
- RColorBrewer * suggests
- covr * suggests
- ecmwfr * suggests
- ggplot2 * suggests
- gridExtra * suggests
- igraph * suggests
- knitr * suggests
- leaflet * suggests
- leaflet.extras * suggests
- ncdf4 * suggests
- plotly * suggests
- readr * suggests
- remotes * suggests
- rgdal * suggests
- rmarkdown * suggests
- rnaturalearth * suggests
- sf * suggests
- shiny * suggests
- shinyWidgets * suggests
- shinyjs * suggests
- sp * suggests
- testthat >= 3.0.0 suggests
.github/workflows/R-CMD-check.yaml
actions
- actions/checkout v3 composite
- r-lib/actions/check-r-package v2 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/lint.yaml
actions
- actions/checkout v3 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/pkgdown.yaml
actions
- JamesIves/github-pages-deploy-action v4.4.1 composite
- actions/checkout v3 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/test-coverage.yaml
actions
- actions/checkout v3 composite
- actions/upload-artifact v3 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/update-citation-cff.yaml
actions
- actions/checkout v3 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite