relter

An Interface for the 'eLTER' Community

https://github.com/ropensci/relter

Science Score: 49.0%

This score indicates how likely this project is to be science-related based on various indicators:

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CITATION.cff file
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codemeta.json file
Found codemeta.json file
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.zenodo.json file
Found .zenodo.json file
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DOI references
Found 6 DOI reference(s) in README
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1 of 8 committers (12.5%) from academic institutions
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Scientific vocabulary similarity
Low similarity (14.8%) to scientific vocabulary

Keywords

biodiversity-informatics data-science ecology elter r research-infrastructure

Last synced: 7 months ago · JSON representation

Repository

An Interface for the 'eLTER' Community

Basic Info

Host: GitHub
Owner: ropensci
License: gpl-3.0
Language: R
Default Branch: main
Homepage: http://docs.ropensci.org/ReLTER
Size: 72.3 MB

Statistics

Stars: 13
Watchers: 6
Forks: 6
Open Issues: 27
Releases: 9

Topics

biodiversity-informatics data-science ecology elter r research-infrastructure

Created about 5 years ago · Last pushed 8 months ago

Metadata Files

Readme Changelog Contributing License Citation Codemeta Zenodo

README.Rmd

---
title: "ReLTER"
output:
  github_document: default
  html_document: default
always_allow_html: yes
editor_options: 
  markdown: 
    wrap: 72
---



```{r, include = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  fig.ext = 'png',
  out.width = "100%")
```



[![](https://badges.ropensci.org/485_status.svg)](https://github.com/ropensci/software-review/issues/485)
`r badger::badge_doi("10.5281/zenodo.5576813", "yellow")`
[![r-universe](https://ropensci.r-universe.dev/badges/ReLTER)](https://ropengov.r-universe.dev/)
`r badger::badge_license("GPL-3")` 
`r badger::badge_code_size("ropensci/ReLTER")`
`r badger::badge_last_commit("ropensci/ReLTER")`
[![Project Status: Active – The
project has reached a stable, usable state and is being actively
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[![codecov](https://codecov.io/gh/ropensci/ReLTER/branch/dev/graph/badge.svg)](https://codecov.io/gh/ropensci/ReLTER)






`{ReLTER}` is an R package that provides access to
[DEIMS-SDR](https://deims.org/), allowing to interact with software
implemented by eLTER Research Infrastructure (RI) and improving the
data/information shared among the Long Term Ecological Research (LTER)
network. This package was conceived within eLTER H2020 project and will
help advance the development of European Long-Term Ecosystem Research
Infrastructures ([eLTER RI](https://elter-ri.eu)).

The `{ReLTER}` package functions in particular allows to:

-   retrieve the information about entities (e.g. sites, datasets, and
    activities) shared by [DEIMS-SDR](https://deims.org/) (see e.g.
    [get_site_info
    function](https://docs.ropensci.org/ReLTER/reference/get_site_info.html));

-   elaborate the information of single site or merge info from national
    network sites or entire International LTER (ILTER) in order to
    provide maps, figures, graphs etc (see e.g.
    [get_network_sites](https://docs.ropensci.org/ReLTER/reference/get_network_sites.html),
    [produce_site_map](https://docs.ropensci.org/ReLTER/reference/produce_site_map.html)
    or
    [produce_site_observedProperties_pie](https://docs.ropensci.org/ReLTER/reference/produce_site_observedProperties_pie.html)
    functions);

-   interact with the [ODSEurope](maps.opendatascience.eu) managed by
    members of the
    [Geo-harmonizer](https://opendatascience.eu/geoharmonizer-project/)
    project starting with the dataset shared by
    [DEIMS-SDR](https://deims.org/) (see e.g.
    [get_site_ODS](https://docs.ropensci.org/ReLTER/reference/get_site_ODS.html)
    function);

-   improve the quality of the dataset (see e.g.
    [get_id_worms](https://docs.ropensci.org/ReLTER/reference/get_id_worms.html)).

Functions currently implemented are derived from the discussion of the
needs declared by eLTER users community.

The `{ReLTER}` package will follow the progress of eLTER-RI
infrastructure and evolve with improvements and development of new
tools.



## :notebook_with_decorative_cover: Citation

To cite `{ReLTER}` please use: Alessandro Oggioni, Micha Silver, Luigi Ranghetti
& Paolo Tagliolato. (2023). ReLTER: An Interface for the eLTER Community
(v2.2). Zenodo. 

or:

``` bibtex
@software{alessandro_oggioni_2021_5576813,
  author       = {Alessandro Oggioni and Micha Silver and Luigi Ranghetti and Paolo Tagliolato},
  title        = {ReLTER: An Interface for the eLTER Community},
  month        = jan,
  year         = 2023,
  publisher    = {Zenodo},
  version      = {v2.2},
  doi          = {10.5281/zenodo.5576813},
  url          = {https://doi.org/10.5281/zenodo.5576813}
}
```

## :book: Documentation

Visit the `{ReLTER}` website at
[docs.ropensci.org/ReLTER/](https://docs.ropensci.org/ReLTER/) for
further documentation, examples, and installation of the package.

The manual of `{ReLTER}` package could be found 
[here](https://ropensci.r-universe.dev/manual/ReLTER.pdf).

## :arrow_double_down: Installation

You can install the main version of `{ReLTER}` from
[GitHub](https://github.com/ropensci/ReLTER) with:

    install.packages("devtools")
    devtools::install_github("ropensci/ReLTER")
    library(ReLTER)

If you want to install different package branch (e.g. 'dev') can you use this command:

    devtools::install_github('https://github.com/ropensci/ReLTER', ref = 'dev')

The `{ReLTER}` package is part of the [R-universe](https://r-universe.dev/) community
and it can be installed also use this command:

    utils::install.packages("ReLTER", repos = "https://ropensci.r-universe.dev")

Alternatively {`ReLTER`} can be used [in a Docker container](./articles/rocker_ReLTER.html).

If you wish to help develop this package, please follow the
[contributing guidelines](CONTRIBUTING.md).

## :woman_technologist: Persons involved :man_technologist:

Alessandro Oggioni  (CNR,
Institute for Electromagnetic Sensing of the Environment - IREA)



Micha Silver  (Ben Gurion
University - BGU)

Luigi Ranghetti  (CNR, Institute
for Electromagnetic Sensing of the Environment - IREA)

Paolo Tagliolato  (CNR,
Institute for Electromagnetic Sensing of the Environment - IREA)

For a exhaustive list of contributors please visit [authors
page](https://docs.ropensci.org/ReLTER/authors).

## :office: Contributing organizations

![CNR-IREA](man/figures/irea_logo.png){height="72"}


![BGU](man/figures/bgu_logo.png){height="80"}


## :thumbsup: Acknowledgements

This work has been partially funded from the European Union's Horizon
2020 research and innovation programme under the [H2020 eLTER-Plus
Project](https://elter-ri.eu/elter-plus) grant agreement No 871128.

Thanks to the reviewers and the editor ([more about authors](https://docs.ropensci.org/ReLTER/authors.html)) for their work.

Owner

Name: rOpenSci
Login: ropensci
Kind: organization
Email: info@ropensci.org
Location: Berkeley, CA

Website: https://ropensci.org/
Twitter: rOpenSci
Repositories: 307
Profile: https://github.com/ropensci

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}

GitHub Events

Total

Create event: 4
Release event: 2
Issues event: 29
Watch event: 1
Delete event: 8
Member event: 1
Issue comment event: 6
Push event: 22
Pull request event: 4

Last Year

Create event: 4
Release event: 2
Issues event: 29
Watch event: 1
Delete event: 8
Member event: 1
Issue comment event: 6
Push event: 22
Pull request event: 4

Committers

Last synced: about 2 years ago

All Time

Total Commits: 405
Total Committers: 8
Avg Commits per committer: 50.625
Development Distribution Score (DDS): 0.437

Past Year

Commits: 46
Committers: 4
Avg Commits per committer: 11.5
Development Distribution Score (DDS): 0.435

Top Committers

Name	Email	Commits
Alessandro Oggioni	o**e@g**m	228
Luigi Ranghetti	g**a@g**m	44
micha-silver	t**r@g**m	39
Paolo Tagliolato	p**o@g**m	33
Micha Silver	s**m@p**l	30
Luigi Ranghetti	r**l@i**t	20
Paolo Tagliolato	p****o	10
Maëlle Salmon	m**n@y**e	1

Committer Domains (Top 20 + Academic)

irea.cnr.it: 1 post.bgu.ac.il: 1

Issues and Pull Requests

Last synced: 7 months ago

All Time

Total issues: 55
Total pull requests: 70
Average time to close issues: 10 months
Average time to close pull requests: about 22 hours
Total issue authors: 7
Total pull request authors: 5
Average comments per issue: 2.18
Average comments per pull request: 0.39
Merged pull requests: 59
Bot issues: 0
Bot pull requests: 0

Past Year

Issues: 14
Pull requests: 4
Average time to close issues: 6 months
Average time to close pull requests: about 1 month
Issue authors: 3
Pull request authors: 1
Average comments per issue: 0.0
Average comments per pull request: 0.0
Merged pull requests: 1
Bot issues: 0
Bot pull requests: 0

View more stats

Top Authors

Issue Authors

oggioniale (21)
micha-silver (17)
maelle (11)
ptagliolato (2)
SacredPhoenix777 (1)
jeancaffou (1)

Pull Request Authors

oggioniale (29)
ptagliolato (19)
micha-silver (11)
ranghetti (9)
maelle (1)

Top Labels

Issue Labels

enhancement (7) bug (4) user question (4) evaluate (4) reduce dependencies (3) documentation (1)

Pull Request Labels

Dependencies

DESCRIPTION cran

R >= 3.5.0 depends
RColorBrewer * imports
dplyr * imports
dtplyr * imports
ggforce * imports
ggplot2 * imports
grDevices * imports
grid * imports
gridExtra * imports
httr * imports
jqr * imports
jsonlite * imports
leaflet >= 2.1.1 imports
magrittr * imports
purrr * imports
qrcode * imports
raster >= 3.3 imports
readr * imports
rgeos * imports
rnaturalearth * imports
rosm * imports
rworldmap * imports
sf >= 0.9 imports
stringr * imports
taxize >= 0.9.97 imports
terra * imports
tibble * imports
tidyr * imports
tmap >= 3.1 imports
utils * imports
waffle * imports
webshot * imports
worrms * imports
xml2 * imports
xslt * imports
ISOcodes * suggests
covr * suggests
httptest * suggests
knitr * suggests
rmarkdown * suggests
rnaturalearthdata * suggests
testthat >= 3.0.0 suggests

.github/workflows/check-standard.yaml actions

actions/cache v2 composite
actions/checkout v2 composite
r-lib/actions/check-r-package v1 composite
r-lib/actions/setup-pandoc v1 composite
r-lib/actions/setup-r v1 composite

.github/workflows/test-coverage.yml actions

actions/cache v2 composite
actions/checkout v2 composite
r-lib/actions/setup-pandoc v1 composite
r-lib/actions/setup-r v1 composite

Dockerfile docker

rocker/geospatial 4.1.2 build

ecosyste.ms

Data

Tools

Indexes

Applications

Experiments

Open Source Science

relter

Science Score: 49.0%

Keywords

Repository

Basic Info

Statistics

Topics

Metadata Files

README.Rmd

Owner

CodeMeta (codemeta.json)

GitHub Events

Total

Last Year

Committers

All Time

Past Year

Top Committers

Committer Domains (Top 20 + Academic)

Issues and Pull Requests

All Time

Past Year

Top Authors

Issue Authors

Pull Request Authors

Top Labels

Issue Labels

Pull Request Labels

Dependencies