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SpatialEcology

Julia framework for spatial ecology - data types and utilities

https://github.com/ecojulia/spatialecology.jl

Science Score: 36.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ○
    CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ○
    Academic publication links
  • ✓
    Committers with academic emails
    3 of 8 committers (37.5%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (12.3%) to scientific vocabulary

Keywords

biogeography ecology julia macroecology

Keywords from Contributors

surrogate pde polytope flux data-frame dataframes tabular-data literate-programming scientific-reports open-science
Last synced: 10 months ago · JSON representation

Repository

Julia framework for spatial ecology - data types and utilities

Basic Info
  • Host: GitHub
  • Owner: EcoJulia
  • License: other
  • Language: Julia
  • Default Branch: main
  • Homepage:
  • Size: 9.54 MB
Statistics
  • Stars: 57
  • Watchers: 5
  • Forks: 7
  • Open Issues: 9
  • Releases: 28
Topics
biogeography ecology julia macroecology
Created almost 10 years ago · Last pushed about 2 years ago
Metadata Files
Readme Changelog License Zenodo

README.md

SpatialEcology

d_stable d_latest

version CI Doc codecov

Primary author: Michael Krabbe Borregaard (@mkborregaard)

A package for community- and macro-ecological analysis in julia. This package offers a set of base types for interoperability in spatial ecology. The idea is to provide a powerful framework for expressing a great variety of analyses in a flexible manner. It presently holds types for presence-absence matrices, site data and species traits, and will be included with phylogenies and ecological interaction networks. SpatialEcology takes care of aligning all data for analysis.

The emphasis is on fast, flexible code operating mainly with views into the larger dataset. It currently holds fast, specialized code for operations on views into sparse matrices (such as presence-absence matrices). This allows analyses to be done in a split-apply-combine framework.

The package originated as a port of the R package nodiv, available from CRAN.

  • Types:
    • Assemblage (holds presence-absence information along with information on traits and sites)
    • ComMatrix (presence-absence matrix)
    • SpatialData (Grid or Point data with site information)

Relevant other packages

This package is part of the EcoJulia organisation, which aims to bring together a coherent set of packages for ecological data analysis.For other relevant packages check the BioJulia organisation focusing on molecular biology, and the JuliaGeo organisation focusing on geographical data analysis. A long-term goal of the EcoJulia organisation is to interface as seamlessly as possible with these projects to create an integrated data analysis framework for julia.

Owner

  • Name: EcoJulia
  • Login: EcoJulia
  • Kind: organization

GitHub Events

Total
Last Year

Committers

Last synced: about 1 year ago

All Time
  • Total Commits: 484
  • Total Committers: 8
  • Avg Commits per committer: 60.5
  • Development Distribution Score (DDS): 0.105
Past Year
  • Commits: 0
  • Committers: 0
  • Avg Commits per committer: 0.0
  • Development Distribution Score (DDS): 0.0
Top Committers
Name Email Commits
Michael Krabbe Borregaard m****d@s****k 433
github-actions[bot] 4****] 17
Kevin Bonham k****m@g****m 16
richardreeve r****e@g****k 13
Timothée Poisot t****t@u****a 2
femtocleaner[bot] f****] 1
Julia TagBot 5****t 1
Felix Cremer f****r@u****e 1
Committer Domains (Top 20 + Academic)
uni-jena.de: 1 umontreal.ca: 1 glasgow.ac.uk: 1 snm.ku.dk: 1

Issues and Pull Requests

Last synced: about 1 year ago

All Time
  • Total issues: 16
  • Total pull requests: 70
  • Average time to close issues: 3 days
  • Average time to close pull requests: about 1 month
  • Total issue authors: 6
  • Total pull request authors: 8
  • Average comments per issue: 9.06
  • Average comments per pull request: 0.76
  • Merged pull requests: 64
  • Bot issues: 0
  • Bot pull requests: 22
Past Year
  • Issues: 0
  • Pull requests: 0
  • Average time to close issues: N/A
  • Average time to close pull requests: N/A
  • Issue authors: 0
  • Pull request authors: 0
  • Average comments per issue: 0
  • Average comments per pull request: 0
  • Merged pull requests: 0
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • mkborregaard (5)
  • kescobo (5)
  • tpoisot (3)
  • vestlink (1)
  • claireh93 (1)
  • JuliaTagBot (1)
Pull Request Authors
  • mkborregaard (37)
  • github-actions[bot] (23)
  • kescobo (5)
  • richardreeve (4)
  • femtocleaner[bot] (1)
  • tpoisot (1)
  • felixcremer (1)
  • JuliaTagBot (1)
Top Labels
Issue Labels
enhancement (1)
Pull Request Labels
enhancement (1)

Packages

  • Total packages: 1
  • Total downloads:
    • julia 2 total
  • Total dependent packages: 2
  • Total dependent repositories: 4
  • Total versions: 26
juliahub.com: SpatialEcology

Julia framework for spatial ecology - data types and utilities

  • Versions: 26
  • Dependent Packages: 2
  • Dependent Repositories: 4
  • Downloads: 2 Total
Rankings
Dependent repos count: 5.5%
Stargazers count: 11.5%
Average: 11.9%
Forks count: 13.1%
Dependent packages count: 17.3%
Last synced: 11 months ago

Dependencies

.github/workflows/CI.yml actions
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  • codecov/codecov-action v3 composite
  • julia-actions/julia-buildpkg v1 composite
  • julia-actions/julia-processcoverage v1 composite
  • julia-actions/julia-runtest v1 composite
  • julia-actions/setup-julia v1 composite
.github/workflows/CompatHelper.yml actions
  • julia-actions/setup-julia v1 composite
.github/workflows/Doc_preview_cleanup.yml actions
  • actions/checkout v2 composite
.github/workflows/Documentation.yml actions
  • actions/checkout v4 composite
  • julia-actions/julia-buildpkg v1 composite
  • julia-actions/setup-julia v1 composite
.github/workflows/TagBot.yml actions
  • JuliaRegistries/TagBot v1 composite