io.github.egonw.bacting:bioclipse
Bioclipse libraries for use in Bacting.
Science Score: 44.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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○Academic publication links
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○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (7.5%) to scientific vocabulary
Keywords
Repository
Bioclipse libraries for use in Bacting.
Basic Info
Statistics
- Stars: 0
- Watchers: 1
- Forks: 0
- Open Issues: 1
- Releases: 9
Topics
Metadata Files
README.md
Bacting - the Bioclipse bundles
Bacting := acting as the Bioclipse TNG (The Next Generation)
These are supporting libraries and not meant to be used directly. Please read the documentation of Bacting instead.
Making releases
Releases are created by the release manager and requires permission to submit the release to Maven Central (using an approved Sonatype (oss.sonatype.org) account).
Instructions to increase the version:
shell
mvn versions:set -DnewVersion=2.8.1.7-SNAPSHOT
Deploy to Sonatype with the following commands, for snapshots and releases respectively:
shell
mvn clean deploy
Copyright and authors
All code in this repository contains Bioclipse 2 code and the headers of the individual source code files describe who contributed to that code of that class, but unfortunately this code ownership is not always clear. I refer to the various Bioclipse code repositories for the git history for more information.
Owner
- Name: Egon Willighagen
- Login: egonw
- Kind: user
- Location: Maastricht, The Netherlands
- Company: @BiGCAT-UM
- Website: https://chem-bla-ics.blogspot.com/
- Repositories: 530
- Profile: https://github.com/egonw
Open scientist teaching and doing research at Maastricht University.
Citation (CITATION.cff)
cff-version: 1.2.0
message: "If you use this software, please cite it as below."
authors:
- family-names: Willighagen
given-names: Egon
orcid: https://orcid.org/0000-0001-7542-0286
title: Bioclipse Libraries
version: 2.8.1.6
date-released: 2025-07-20
url: "https://github.com/egonw/bacting-bioclipse"
preferred-citation:
type: article
authors:
- family-names: Willighagen
given-names: Egon L.
title: "Bacting: a next generation, command line version of Bioclipse"
year: 2021
month: 6
day: 23
journal: Journal of Open Source Software
volume: 6
issue: 62
doi: 10.21105/joss.02558
url: https://doi.org/10.21105/joss.02558
GitHub Events
Total
- Push event: 8
- Pull request event: 4
- Create event: 3
Last Year
- Push event: 8
- Pull request event: 4
- Create event: 3
Issues and Pull Requests
Last synced: 4 months ago
All Time
- Total issues: 1
- Total pull requests: 14
- Average time to close issues: about 1 month
- Average time to close pull requests: about 1 month
- Total issue authors: 1
- Total pull request authors: 1
- Average comments per issue: 1.0
- Average comments per pull request: 0.0
- Merged pull requests: 12
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 0
- Pull requests: 6
- Average time to close issues: N/A
- Average time to close pull requests: about 1 month
- Issue authors: 0
- Pull request authors: 1
- Average comments per issue: 0
- Average comments per pull request: 0.0
- Merged pull requests: 5
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- egonw (1)
Pull Request Authors
- egonw (16)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 8
- Total downloads: unknown
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Total dependent packages: 22
(may contain duplicates) -
Total dependent repositories: 8
(may contain duplicates) - Total versions: 238
repo1.maven.org: io.github.egonw.bacting:bioclipse-core
Bacting := acting as the Bioclipse TNG. Bioclipse version that can be used from the command line, e.g. with Groovy.
- Homepage: http://www.github.com/egonw/bacting
- Documentation: https://appdoc.app/artifact/io.github.egonw.bacting/bioclipse-core/
- License: Eclipse Public License v1.0 + GPL Exception
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Latest release: 2.8.1.6
published 5 months ago
Rankings
repo1.maven.org: io.github.egonw.bacting:bioclipse-cdkbusiness
Bacting := acting as the Bioclipse TNG. Bioclipse version that can be used from the command line, e.g. with Groovy.
- Homepage: http://www.github.com/egonw/bacting
- Documentation: https://appdoc.app/artifact/io.github.egonw.bacting/bioclipse-cdkbusiness/
- License: Eclipse Public License v1.0 + GPL Exception
-
Latest release: 2.8.1.6
published 5 months ago
Rankings
repo1.maven.org: io.github.egonw.bacting:bioclipse
Bacting := acting as the Bioclipse TNG. Bioclipse version that can be used from the command line, e.g. with Groovy.
- Homepage: http://www.github.com/egonw/bacting
- Documentation: https://appdoc.app/artifact/io.github.egonw.bacting/bioclipse/
- License: Eclipse Public License v1.0 + GPL Exception
-
Latest release: 2.8.1.6
published 5 months ago
Rankings
repo1.maven.org: io.github.egonw.bacting:bioclipse-inchi
Bacting := acting as the Bioclipse TNG. Bioclipse version that can be used from the command line, e.g. with Groovy.
- Homepage: http://www.github.com/egonw/bacting
- Documentation: https://appdoc.app/artifact/io.github.egonw.bacting/bioclipse-inchi/
- License: Eclipse Public License v1.0 + GPL Exception
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Latest release: 2.8.1.6
published 5 months ago
Rankings
repo1.maven.org: io.github.egonw.bacting:bioclipse-report
Bacting := acting as the Bioclipse TNG. Bioclipse version that can be used from the command line, e.g. with Groovy.
- Homepage: http://www.github.com/egonw/bacting
- Documentation: https://appdoc.app/artifact/io.github.egonw.bacting/bioclipse-report/
- License: Eclipse Public License v1.0 + GPL Exception
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Latest release: 2.8.1.6
published 5 months ago
Rankings
repo1.maven.org: io.github.egonw.bacting:bioclipse-bridgedb
Bacting := acting as the Bioclipse TNG. Bioclipse version that can be used from the command line, e.g. with Groovy.
- Homepage: http://www.github.com/egonw/bacting
- Documentation: https://appdoc.app/artifact/io.github.egonw.bacting/bioclipse-bridgedb/
- License: Eclipse Public License v1.0 + GPL Exception
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Latest release: 2.8.1.6
published 5 months ago
Rankings
repo1.maven.org: io.github.egonw.bacting:bioclipse-rdfcore
Bacting := acting as the Bioclipse TNG. Bioclipse version that can be used from the command line, e.g. with Groovy.
- Homepage: http://www.github.com/egonw/bacting
- Documentation: https://appdoc.app/artifact/io.github.egonw.bacting/bioclipse-rdfcore/
- License: Eclipse Public License v1.0 + GPL Exception
-
Latest release: 2.8.1.6
published 5 months ago
Rankings
repo1.maven.org: io.github.egonw.bacting:bioclipse-rdf
Bacting := acting as the Bioclipse TNG. Bioclipse version that can be used from the command line, e.g. with Groovy.
- Homepage: http://www.github.com/egonw/bacting
- Documentation: https://appdoc.app/artifact/io.github.egonw.bacting/bioclipse-rdf/
- License: Eclipse Public License v1.0 + GPL Exception
-
Latest release: 2.8.1.6
published 5 months ago
Rankings
Dependencies
- org.bridgedb:org.bridgedb 3.0.15
- io.github.egonw.bacting:bioclipse-core 2.8.0.15
- org.openscience.cdk:cdk-inchi 2.7.1
- org.openscience.cdk:cdk-io 2.7.1
- org.openscience.cdk:cdk-jniinchi-support 2.7.1
- org.openscience.cdk:cdk-libiocml 2.7.1
- org.openscience.cdk:cdk-silent 2.7.1
- org.openscience.cdk:cdk-smiles 2.7.1
- org.eclipse.platform:org.eclipse.core.resources 3.16.100
- org.eclipse.platform:org.eclipse.core.runtime 3.24.100
- io.github.egonw.bacting:bioclipse-core 2.8.0.15
- io.github.egonw.bacting:bioclipse-rdfcore 2.8.0.15
- org.apache.jena:jena-arq 4.5.0
- org.apache.jena:jena-tdb 4.5.0
- io.github.egonw.bacting:bioclipse-core 2.8.0.15