brainrender-napari
A napari plugin to render BrainGlobe atlases and associated data as layers.
Science Score: 44.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
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✓codemeta.json file
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✓.zenodo.json file
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○DOI references
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○Institutional organization owner
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○Scientific vocabulary similarity
Low similarity (14.3%) to scientific vocabulary
Repository
A napari plugin to render BrainGlobe atlases and associated data as layers.
Basic Info
Statistics
- Stars: 22
- Watchers: 3
- Forks: 13
- Open Issues: 31
- Releases: 12
Metadata Files
README.md
brainrender-napari
Visualisation and management of BrainGlobe atlases in napari.
A napari plugin to visualise and manage BrainGlobe atlases. brainrender-napari aims to port the functionality of brainrender to napari.
Usage
Check out the "Visualising an atlas in napari" tutorial in the BrainGlobe documentation.
Installation
We strongly recommend to use a virtual environment manager (like conda or venv). The installation instructions below will not specify the Qt backend for napari, and you will therefore need to install that separately. Please see the napari installation instructions for further advice on this.
You can install brainrender-napari via pip:
pip install brainrender-napari
To install latest development version :
pip install git+https://github.com/brainglobe/brainrender-napari.git
Seeking help or contributing
We are always happy to help users of our tools, and welcome any contributions. If you would like to get in contact with us for any reason, please see the contact page of our website.
License
Distributed under the terms of the BSD-3 license, "brainrender-napari" is free and open source software
Acknowledgements
This @napari plugin was generated with Cookiecutter using @napari's cookiecutter-napari-plugin template and the Neuroinformatics Unit's template.
Owner
- Name: BrainGlobe
- Login: brainglobe
- Kind: organization
- Location: London/Munich
- Website: https://brainglobe.info/
- Twitter: brain_globe
- Repositories: 28
- Profile: https://github.com/brainglobe
Open python tools for morphological analyses in systems neuroscience
Citation (CITATION.cff)
# This CITATION.cff file was generated with cffinit.
# Visit https://bit.ly/cffinit to generate yours today!
cff-version: 1.2.0
title: brainrender-napari
message: >-
If you use this software, please cite it using the
metadata from this file.
type: software
authors:
- given-names: Alessandro
family-names: Felder
email: a.felder@ucl.ac.uk
- given-names: BrainGlobe
family-names: Developers
email: hello@brainglobe.info
repository-code: 'https://github.com/brainglobe/brainrender-napari'
url: 'https://brainglobe.info'
abstract: >-
Visualisation and management of BrainGlobe atlases in
napari.
license: BSD-3-Clause
date-released: '2023-10-13'
year: 2023
GitHub Events
Total
- Create event: 23
- Release event: 5
- Issues event: 19
- Watch event: 3
- Delete event: 16
- Issue comment event: 146
- Push event: 31
- Pull request review comment event: 38
- Pull request review event: 81
- Pull request event: 70
- Fork event: 11
Last Year
- Create event: 23
- Release event: 5
- Issues event: 19
- Watch event: 3
- Delete event: 16
- Issue comment event: 146
- Push event: 31
- Pull request review comment event: 38
- Pull request review event: 81
- Pull request event: 70
- Fork event: 11
Issues and Pull Requests
Last synced: 7 months ago
All Time
- Total issues: 12
- Total pull requests: 32
- Average time to close issues: 7 months
- Average time to close pull requests: 6 days
- Total issue authors: 4
- Total pull request authors: 11
- Average comments per issue: 1.92
- Average comments per pull request: 2.22
- Merged pull requests: 16
- Bot issues: 0
- Bot pull requests: 5
Past Year
- Issues: 8
- Pull requests: 32
- Average time to close issues: 14 days
- Average time to close pull requests: 6 days
- Issue authors: 3
- Pull request authors: 11
- Average comments per issue: 1.13
- Average comments per pull request: 2.22
- Merged pull requests: 16
- Bot issues: 0
- Bot pull requests: 5
Top Authors
Issue Authors
- alessandrofelder (15)
- adamltyson (6)
- kira1228 (2)
- hkneu-95 (1)
- TimMonko (1)
- pderdeyn (1)
Pull Request Authors
- alessandrofelder (17)
- pre-commit-ci[bot] (15)
- kira1228 (8)
- IgorTatarnikov (5)
- conradRz (3)
- Gunnzzz-tech (2)
- K-Meech (2)
- willGraham01 (2)
- lochhh (1)
- adamltyson (1)
- TanmmayKoli (1)
- frdysf (1)
- imisi99 (1)
Top Labels
Issue Labels
Pull Request Labels
Packages
- Total packages: 1
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Total downloads:
- pypi 1,206 last-month
- Total dependent packages: 1
- Total dependent repositories: 0
- Total versions: 12
- Total maintainers: 1
pypi.org: brainrender-napari
A napari plugin to render BrainGlobe atlases and associated data as layers.
- Homepage: https://github.com/brainglobe/brainrender-napari
- Documentation: https://brainglobe.github.io/brainrender-napari
- License: BSD-3-Clause
-
Latest release: 0.1.3
published 7 months ago
Rankings
Maintainers (1)
Dependencies
- GabrielBB/xvfb-action v1 composite
- actions/cache v3 composite
- actions/checkout v3 composite
- actions/setup-python v4 composite
- codecov/codecov-action v2 composite
- tlambert03/setup-qt-libs v1 composite