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shell-genomics

Introduction to the Command Line for Genomics

https://github.com/datacarpentry/shell-genomics

Science Score: 67.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ✓
    DOI references
    Found 7 DOI reference(s) in README
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ○
    Academic email domains
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    Institutional organization owner
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    JOSS paper metadata
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    Scientific vocabulary similarity
    Low similarity (5.1%) to scientific vocabulary

Keywords

carpentries data-carpentry english genomics lesson programming shell stable
Last synced: 4 months ago · JSON representation ·

Repository

Introduction to the Command Line for Genomics

Basic Info
Statistics
  • Stars: 66
  • Watchers: 24
  • Forks: 193
  • Open Issues: 20
  • Releases: 3
Topics
carpentries data-carpentry english genomics lesson programming shell stable
Created almost 11 years ago · Last pushed 4 months ago
Metadata Files
Readme Contributing License Code of conduct Citation Authors Zenodo

README.md

DOI

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Shell Genomics lessons

An introduction to the Unix shell for people working with genomics data. This lesson is part of the Data Carpentry Genomics Workshop. Please see http://www.datacarpentry.org/shell-genomics/ for a rendered version of this material.

Contribution

Make a suggestion or correct an error by raising an Issue.

Code of Conduct

All participants should agree to abide by the Data Carpentry Code of Conduct.

Authors

Shell Genomics is authored and maintained by the community.

Citation

Please cite as:

Erin Alison Becker, Anita Schürch, Tracy Teal, Sheldon John McKay, Jessica Elizabeth Mizzi, François Michonneau, et al. (2019, June). datacarpentry/shell-genomics: Data Carpentry: Introduction to the shell for genomics data, June 2019 (Version v2019.06.1). Zenodo. http://doi.org/10.5281/zenodo.3260560

Owner

  • Name: Data Carpentry
  • Login: datacarpentry
  • Kind: organization
  • Email: team@carpentries.org

Workshops teaching scientists basic skills for retrieving, viewing, managing, and manipulating data in an open and reproducible way.

Citation (CITATION) 

Please cite as:
Erin Alison Becker, Anita Schürch, Tracy Teal, Sheldon John McKay, Jessica Elizabeth Mizzi, 
François Michonneau, et al. (2019, June). datacarpentry/shell-genomics: Data Carpentry: Introduction to the shell for genomics data, 
June 2019 (Version v2019.06.1). Zenodo. http://doi.org/10.5281/zenodo.3260560

GitHub Events

Total
  • Issues event: 3
  • Watch event: 3
  • Delete event: 10
  • Issue comment event: 7
  • Push event: 53
  • Pull request review comment event: 1
  • Pull request review event: 5
  • Pull request event: 13
  • Fork event: 4
  • Create event: 7
Last Year
  • Issues event: 3
  • Watch event: 3
  • Delete event: 10
  • Issue comment event: 7
  • Push event: 53
  • Pull request review comment event: 1
  • Pull request review event: 5
  • Pull request event: 13
  • Fork event: 4
  • Create event: 7

Issues and Pull Requests

Last synced: 4 months ago

All Time
  • Total issues: 3
  • Total pull requests: 9
  • Average time to close issues: over 5 years
  • Average time to close pull requests: about 1 month
  • Total issue authors: 3
  • Total pull request authors: 6
  • Average comments per issue: 4.0
  • Average comments per pull request: 0.78
  • Merged pull requests: 6
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 0
  • Pull requests: 8
  • Average time to close issues: N/A
  • Average time to close pull requests: 23 days
  • Issue authors: 0
  • Pull request authors: 6
  • Average comments per issue: 0
  • Average comments per pull request: 0.75
  • Merged pull requests: 5
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • BenjaminSchwessinger (1)
  • Parcelli (1)
  • jlchang (1)
  • ctb (1)
  • ryanpeek (1)
  • bkmgit (1)
Pull Request Authors
  • carpentries-bot (3)
  • ameynert (3)
  • p-j-smith (3)
  • ggrimes (2)
  • maneesha (1)
  • bkmgit (1)
  • TaylorKT (1)
  • sstevens2 (1)
Top Labels
Issue Labels
type:enhancement (2) status:out of scope (1) type:discussion (1) type:clarification (1) status:in progress (1)
Pull Request Labels
type: template and tools (3)

Dependencies

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