Science Score: 64.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
✓codemeta.json file
Found codemeta.json file -
✓.zenodo.json file
Found .zenodo.json file -
○DOI references
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✓Academic publication links
Links to: zenodo.org -
✓Committers with academic emails
12 of 87 committers (13.8%) from academic institutions -
○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (8.3%) to scientific vocabulary
Keywords
data-dictionaries
data-modeling
hacktoberfest
json-ld-context
json-schema
linked-data
linkml
linkml-schema
modeling
owl
rdf
schema
semantic-web
shacl
shex
standards
Keywords from Contributors
obofoundry
monarchinitiative
language-models
gpt-3
information-extraction
large-language-models
named-entity-recognition
ner
biocuration
ontologies
Last synced: 4 months ago
·
JSON representation
·
Repository
Linked Open Data Modeling Language
Basic Info
- Host: GitHub
- Owner: linkml
- License: other
- Language: Python
- Default Branch: main
- Homepage: https://linkml.io/linkml
- Size: 111 MB
Statistics
- Stars: 404
- Watchers: 20
- Forks: 128
- Open Issues: 648
- Releases: 149
Topics
data-dictionaries
data-modeling
hacktoberfest
json-ld-context
json-schema
linked-data
linkml
linkml-schema
modeling
owl
rdf
schema
semantic-web
shacl
shex
standards
Created almost 5 years ago
· Last pushed 4 months ago
Metadata Files
Readme
Contributing
License
Code of conduct
Citation
README.md
LinkML - Linked Data Modeling Language
LinkML is a linked data modeling language following object-oriented and ontological principles. LinkML models are typically authored in YAML, and can be converted to other schema representation formats such as JSON or RDF.
This repo holds the tools for generating and working with LinkML. For the LinkML schema (metamodel), please see https://github.com/linkml/linkml-model
The complete documentation for LinkML can be found here:
Owner
- Name: Linked data Modeling Language
- Login: linkml
- Kind: organization
- Website: https://linkml.github.io/
- Twitter: linkml_data
- Repositories: 40
- Profile: https://github.com/linkml
LinkML is a general purpose modeling language that can be used with linked data, JSON, and other formalisms
Citation (CITATION.cff)
cff-version: 1.2.0
message: If you use this software, please cite it as below.
authors:
- family-names: Moxon
given-names: Sierra
orcid: https://orcid.org/0000-0002-8719-7760
affiliation: "Lawrence Berkeley National Laboratory (LBNL)"
- family-names: Kalita
given-names: Patrick
affiliation: "Lawrence Berkeley National Laboratory (LBNL)"
- family-names: Saunders
given-names: Jonny
affiliation: "Lawrence Berkeley National Laboratory (LBNL)"
- family-names: Hegde
given-names: Harshad
affiliation: "Lawrence Berkeley National Laboratory (LBNL)"
- family-names: Patil
given-names: Sujay
affiliation: "Lawrence Berkeley National Laboratory (LBNL)"
- family-names: Schaper
given-names: Kevin
affiliation: "University of North Carolina - Chapel Hill"
- family-names: Harris
given-names: Nomi
orcid: https://orcid.org/0000-0001-6315-3707
affiliation: "Lawrence Berkeley National Laboratory (LBNL)"
- family-names: Cox
given-names: Corey
affiliation: "University of North Carolina - Chapel Hill"
- family-names: Linke
given-names: David
affiliation: "Leibniz-Institut für Katalyse e.V. (LIKAT)"
- family-names: Unni
given-names: Deepak
affiliation: "SIB Swiss Institute of Bioinformatics"
- family-names: Vaidya
given-names: Gaurav
affiliation: "RENCI"
- family-names: Putman
given-names: Tim
- family-names: Solbrig
given-names: Harold
affiliation: "independent"
- family-names: "All GitHub Contributors"
given-names: "https://github.com/linkml/linkml/graphs/contributors"
- family-names: Haendel
given-names: Melissa
orcid: https://orcid.org/0000-0001-9114-8737
affiliation: "University of Colorado Anschutz"
- family-names: Mungall
given-names: Chris
orcid: https://orcid.org/0000-0002-6601-2165
affiliation: "Lawrence Berkeley National Laboratory (LBNL)"
title: LinkML
repository-code: https://github.com/linkml/linkml
url: https://limkml.io
Committers
Last synced: 8 months ago
Top Committers
| Name | Commits | |
|---|---|---|
| Chris Mungall | c****m@b****g | 481 |
| Sujay Patil | s****l@g****m | 311 |
| GitHub Action | a****n@g****m | 243 |
| Patrick Kalita | p****a@l****v | 221 |
| sneakers-the-rat | s****t@p****m | 214 |
| Sierra Taylor Moxon | s****r@g****m | 198 |
| Harold Solbrig | s****g@j****u | 98 |
| Harshad Hegde | h****b@g****m | 71 |
| David Linke | d****e@g****m | 58 |
| Kevin Schaper | k****r@g****m | 47 |
| Silvano Cirujano Cuesta | s****a@s****m | 40 |
| Mark A. Miller | M****M@l****v | 40 |
| Nomi Harris | n****s | 27 |
| ialarmedalien | i****n@g****m | 25 |
| Tim Fliss | t****s@g****m | 25 |
| Corey Cox | 6****x | 24 |
| Gaurav Vaidya | g****v@g****m | 23 |
| VictoriaSavageNNL | V****1@u****v | 21 |
| Ben Dichter | b****r@g****m | 16 |
| glass-ships | g****s@o****m | 15 |
| Deepak Unni | d****3@g****m | 13 |
| Parker Gleason-Bremer | p****r@a****m | 11 |
| rly | r****y@l****v | 11 |
| Will Halfpenny | 3****0 | 10 |
| Nolan Nichols | n****s@a****m | 10 |
| Jeffrey N. Johnson | j****f@c****m | 9 |
| Vincent Kelleher | v****r@h****r | 9 |
| madanucd | m****n@t****g | 9 |
| Bill Duncan | w****n@g****m | 9 |
| joeflack4 | j****4@g****m | 8 |
| and 57 more... | ||
Committer Domains (Top 20 + Academic)
lbl.gov: 3
altoslabs.com: 2
v-lad.org: 1
univ-amu.fr: 1
kreuzwerker.de: 1
fz-juelich.de: 1
email.unc.com: 1
polyneme.xyz: 1
qmul.ac.uk: 1
delphinai.com: 1
manchester.ac.uk: 1
onerussian.com: 1
tislab.org: 1
cohere-llc.com: 1
unnpp.gov: 1
ggvaidya.com: 1
siemens.com: 1
jhu.edu: 1
github.com: 1
nationwidechildrens.org: 1
unc.edu: 1
uni-tuebingen.de: 1
med.uni-frankfurt.de: 1
ucsd.edu: 1
Issues and Pull Requests
Last synced: 4 months ago
All Time
- Total issues: 972
- Total pull requests: 1,106
- Average time to close issues: 11 months
- Average time to close pull requests: about 1 month
- Total issue authors: 161
- Total pull request authors: 80
- Average comments per issue: 1.74
- Average comments per pull request: 2.26
- Merged pull requests: 734
- Bot issues: 0
- Bot pull requests: 90
Past Year
- Issues: 265
- Pull requests: 415
- Average time to close issues: 17 days
- Average time to close pull requests: 13 days
- Issue authors: 73
- Pull request authors: 44
- Average comments per issue: 0.65
- Average comments per pull request: 2.09
- Merged pull requests: 220
- Bot issues: 0
- Bot pull requests: 46
Top Authors
Issue Authors
- cmungall (176)
- turbomam (88)
- Silvanoc (64)
- hsolbrig (47)
- pkalita-lbl (39)
- sneakers-the-rat (37)
- sierra-moxon (35)
- sujaypatil96 (28)
- matentzn (19)
- dalito (19)
- ialarmedalien (13)
- candleindark (12)
- kevinschaper (12)
- rly (12)
- multimeric (11)
Pull Request Authors
- cmungall (195)
- sneakers-the-rat (137)
- Silvanoc (76)
- sujaypatil96 (73)
- sierra-moxon (65)
- linkml-pr-bot[bot] (64)
- pkalita-lbl (55)
- vladistan (40)
- dalito (34)
- nlharris (31)
- kevinschaper (27)
- dependabot[bot] (22)
- bendichter (21)
- ialarmedalien (21)
- vincentkelleher (21)
Top Labels
Issue Labels
bug (363)
community-generated (241)
enhancement (137)
documentation (84)
testing (52)
linkml-validate (52)
developer-days (51)
devops (49)
generator-pydantic (45)
generator-misc (40)
question (36)
generator-jsonschema (32)
december-developer-days (30)
generator-doc (30)
good first issue (29)
linkml-runtime (27)
prefixes (25)
generator-jsonld (24)
Low severity (18)
generator-owl (17)
generator-dataclasses (16)
backlog (15)
metamodel (14)
doc-generator (13)
generator-rdf (12)
NMDC (12)
schemaview (11)
linting (10)
generator-python (9)
rdf-generator (8)
Pull Request Labels
poetry (64)
generator-pydantic (40)
devops (34)
github_actions (22)
dependencies (22)
community-generated (18)
documentation (13)
bug (11)
testing (9)
december-developer-days (8)
chore (6)
enhancement (6)
generator-python (4)
generator-doc (4)
generator-jsonschema (4)
generator-jsonld (4)
arrays (4)
developer-days (3)
linting (3)
NMDC (2)
generator-SQL (2)
generator-plantuml (2)
generator-rdf (2)
cli (1)
generator-typescript (1)
generator-golang (1)
generator-rust (1)
linkml-convert (1)
Packages
- Total packages: 2
-
Total downloads:
- pypi 94,392 last-month
- Total docker downloads: 1,262
-
Total dependent packages: 33
(may contain duplicates) -
Total dependent repositories: 106
(may contain duplicates) - Total versions: 278
- Total maintainers: 4
pypi.org: linkml
Linked Open Data Modeling Language
- Documentation: https://linkml.readthedocs.io/
- License: other
-
Latest release: 1.9.4
published 5 months ago
Rankings
Dependent packages count: 0.5%
Dependent repos count: 1.5%
Downloads: 2.5%
Average: 3.1%
Docker downloads count: 4.3%
Stargazers count: 4.5%
Forks count: 5.3%
Maintainers (4)
Last synced:
4 months ago
proxy.golang.org: github.com/linkml/linkml
- Documentation: https://pkg.go.dev/github.com/linkml/linkml#section-documentation
- License: other
-
Latest release: v1.9.4
published 5 months ago
Rankings
Dependent packages count: 6.2%
Average: 6.4%
Dependent repos count: 6.6%
Last synced:
4 months ago
Dependencies
.github/workflows/docker-build.yaml
actions
- actions/checkout v3 composite
- docker/build-push-action v3 composite
- docker/login-action v2 composite
- docker/metadata-action v4 composite
- docker/setup-buildx-action v2 composite
- docker/setup-qemu-action v2 composite
.github/workflows/main.yaml
actions
- actions/cache v3 composite
- actions/checkout v3 composite
- actions/setup-python v3 composite
- codecov/codecov-action v3.1.0 composite
- snok/install-poetry v1.3.1 composite
- ts-graphviz/setup-graphviz v1 composite
.github/workflows/pypi-publish.yaml
actions
- actions/checkout v3.1.0 composite
- actions/setup-python v4 composite
- pypa/gh-action-pypi-publish v1.5.0 composite
Dockerfile
docker
- python 3.9-bullseye build
- python 3.9-slim-bullseye build
poetry.lock
pypi
- 146 dependencies
pyproject.toml
pypi
- chardet * develop
- coverage ^6.4.1 develop
- ipykernel * develop
- ipython-genutils * develop
- nbconvert * develop
- nbformat * develop
- antlr4-python3-runtime <4.10,==4.*,>=4.9.0
- click >=7.0
- furo ^2022.9.29
- graphviz >=0.10.1
- hbreader *
- isodate >=0.6.0
- jinja2 >= 3.1.0
- jsonasobj2 ==1.*,>=1.0.0,>=1.0.3
- jsonschema >=4.0.0
- linkml-dataops *
- linkml-runtime ^1
- myst-parser *
- openpyxl *
- parse *
- prefixcommons >=0.1.7
- prefixmaps ^0.1.3
- pydantic *
- pyjsg >=0.11.6
- pyshex >=0.7.20
- pyshexc >=0.8.3
- python ^3.7.6
- python-dateutil *
- pyyaml *
- rdflib >=6.0.0
- requests >=2.22
- sphinx *
- sphinx-click *
- sphinx-rtd-theme *
- sphinxcontrib-mermaid ^0.7.1
- sqlalchemy >=1.4.31
- tox ^3.25.1
- watchdog >=0.9.0
tests/test_rewrite_rules/httpd/Dockerfile
docker
- httpd 2.4 build
.github/workflows/check-external-links.yaml
actions
- actions/checkout v3.1.0 composite
- actions/setup-python v5 composite
- snok/install-poetry v1 composite
.github/workflows/doc-pages.yaml
actions
- JamesIves/github-pages-deploy-action v4.4.1 composite
- actions/checkout v4 composite
- actions/setup-python v5 composite
.github/workflows/docs-test.yaml
actions
- actions/checkout v4 composite
- actions/setup-python v5 composite
.github/workflows/poetry-update.yaml
actions
- actions/checkout v4 composite
- actions/create-github-app-token v1 composite
- actions/setup-python v5 composite
- peter-evans/create-pull-request v6 composite
- snok/install-poetry v1 composite
tests/test_base/__snapshots__/meta.json
cpan
tests/test_scripts/__snapshots__/genjsonld/meta.json
cpan
tests/test_scripts/__snapshots__/genjsonschema/meta.json
cpan