mouse

Toolkit for processing, localisation and classification of rodent ultrasonic squeaks.

https://github.com/josephthemouse/mouse

Science Score: 44.0%

This score indicates how likely this project is to be science-related based on various indicators:

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CITATION.cff file
Found CITATION.cff file
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codemeta.json file
Found codemeta.json file
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.zenodo.json file
Found .zenodo.json file
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DOI references
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Academic publication links
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Institutional organization owner
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JOSS paper metadata
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Scientific vocabulary similarity
Low similarity (10.5%) to scientific vocabulary

Last synced: 9 months ago · JSON representation ·

Repository

Toolkit for processing, localisation and classification of rodent ultrasonic squeaks.

Basic Info

Host: GitHub
Owner: JosephTheMoUSE
License: mit
Language: Jupyter Notebook
Default Branch: main
Homepage:
Size: 1.79 MB

Statistics

Stars: 6
Watchers: 3
Forks: 1
Open Issues: 20
Releases: 0

Created over 4 years ago · Last pushed over 1 year ago

Metadata Files

Readme License Citation

MoUSE backend overview

MoUSE - Mouse Ultrasonic Squeak Explorer

This repo contains the backend for our whole JosephTheMoUSE project. This is toolkit for processing, localisation and classification of rodent ultrasonic squeaks written in Python.

Backend MoUSE istallation

For Developers

If you are familiar with programming, use below instructions for this MoUSE backend installation. Firstly, it is available to run it on windows/linux/macOS. You just need to have installed on your computer Python in version ^3.11 and Poetry compatible with your Python version. In the Python installation add it to the environment variable PATH on your computer. The same do with the Poetry. Add it to the environment variable PATH. We are using Poetry for dependency management as it is nowadays very popular and efficient tool for this purpose.

Now, please clone this repository to your destination folder as follows:

bash $ git clone https://github.com/JosephTheMoUSE/MoUSE.git $ cd MoUSE

bash $ poetry install

After that, you are ready to go!

For Users

bash $ python -m pip install git+https://github.com/JosephTheMoUSE/MoUSE.git

I you you want to install MoUSE Desktop App (frontend) see MoUSE Desktop App repository. If you are looking for a MoUSE Desktop App usage tutorial, see MoUSE wiki page.

If you have some problems with this MoUSE backend installation, post an issue on github and we will try to help you.

Owner

Name: JosephTheMoUSE
Login: JosephTheMoUSE
Kind: organization
Email: josephthemouse@googlegroups.com

Repositories: 3
Profile: https://github.com/JosephTheMoUSE

Citation (CITATION.cff)

cff-version: 1.2.0
title: "Joseph the MoUSE: Application for rodent ultrasonic identification - backend. Described in: Kania, Adam, et al. 'Joseph the MoUSE—Mouse Ultrasonic Sound Explorer.' SoftwareX 25 (2024): 101606."
message: >-
  Thank you for using Joseph the MoUSE. If you use this software in your 
  research, please cite the corresponding article: 
  Kania, Adam, et al. "Joseph the MoUSE—Mouse Ultrasonic Sound Explorer." 
  SoftwareX 25 (2024): 101606.
type: software
authors:
  - given-names: Leszek
    family-names: Grzanka
    affiliation: 'Institute of Nuclear Physics: Krakow, PL'
    orcid: 'https://orcid.org/0000-0002-3599-854X'
  - given-names: Diana
    family-names: Piotrowska
    affiliation: 'Sahlgrenska Akademin: Göteborg, SE'
    orcid: 'https://orcid.org/0000-0001-7132-0691'
  - given-names: Andrzej
    family-names: Siódmok
    affiliation: 'Jagiellonian University: Krakow, PL'
    orcid: 'https://orcid.org/0000-0001-9614-7856'
  - given-names: Weronika
    family-names: Ormaniec
    orcid: 'https://orcid.org/0009-0007-8868-1363'
  - given-names: Adam
    family-names: Kania
    orcid: 'https://orcid.org/0000-0002-0364-4907'
  - given-names: Dmytro
    family-names: Zhylko
    orcid: 'https://orcid.org/0009-0001-7218-4772'
license: MIT

GitHub Events

Total

Watch event: 1
Delete event: 8
Issue comment event: 16
Push event: 11
Pull request review event: 1
Pull request event: 12
Create event: 11

Last Year

Watch event: 1
Delete event: 8
Issue comment event: 16
Push event: 11
Pull request review event: 1
Pull request event: 12
Create event: 11

Issues and Pull Requests

Last synced: 10 months ago

All Time

Total issues: 0
Total pull requests: 1
Average time to close issues: N/A
Average time to close pull requests: 2 months
Total issue authors: 0
Total pull request authors: 1
Average comments per issue: 0
Average comments per pull request: 2.0
Merged pull requests: 0
Bot issues: 0
Bot pull requests: 1

Past Year

Issues: 0
Pull requests: 1
Average time to close issues: N/A
Average time to close pull requests: 2 months
Issue authors: 0
Pull request authors: 1
Average comments per issue: 0
Average comments per pull request: 2.0
Merged pull requests: 0
Bot issues: 0
Bot pull requests: 1

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