multi-shell-dmriharmonization - Combined, containerized single-multi shell harmonization

• Combined single and multi shell software
• Provides Singularity container
• Eliminates psutil
• Provides --ncpu 1 debug option
• Revised installation infrastructure supporting python==3.8 and dipy==1.8.0
• Test for multi shell software
• Provides MCRROOT to only spm_bspline
• Fixes meanFAstat plot for unequal number of reference and target subjects

- Python
Published by tashrifbillah 10 months ago

multi-shell-dmriharmonization - Point of retrun before combining single and multi shell software

This release contain ordinary changes over v1.7. These are safe changes. This release will serve as the point of return before combining single and multi shell harmonization software.

PRs merged: #37 , #40 , #41 , #42 .

- Python
Published by tashrifbillah 10 months ago

multi-shell-dmriharmonization - Update GFA calculation and harmonized FA warping to MNI

PR https://github.com/pnlbwh/multi-shell-dMRIharmonization/pull/37 PR https://github.com/pnlbwh/multi-shell-dMRIharmonization/pull/32 PR https://github.com/pnlbwh/multi-shell-dMRIharmonization/pull/29

(This release was sitting in draft for a long time. So publishing it)

- Python
Published by tashrifbillah over 1 year ago

multi-shell-dmriharmonization - Bug fixes from v1.5 and some enhancements

• BUG fixes
  • near-zero bvalue handling
  • smoothing parameter

Fixed #18, #19, #21

• /tmp-->tempfile.gettempdir()

- Python
Published by tashrifbillah about 5 years ago

multi-shell-dmriharmonization - Memory efficient, rewrite capable, structured output

1. dti_harm() is separated from preprocess()
2. --force is coupled with writing each file
3. statistics are exported to csv file
4. graph is provided to demonstrate goodness of dMRIharmonization

- Python
Published by tashrifbillah about 6 years ago

multi-shell-dmriharmonization - Functional pipeline

TBD:

i. Whole pipeline tests ii. Unit tests iii. Public test data

- Python
Published by tashrifbillah over 6 years ago

multi-shell-dmriharmonization - Initial release

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- Python
Published by tashrifbillah over 6 years ago