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Open Source Science

ioos_code_lab

Notebook demonstrations and examples

https://github.com/ioos/ioos_code_lab

Science Score: 64.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • ✓
    CITATION.cff file
    Found CITATION.cff file
  • ✓
    codemeta.json file
    Found codemeta.json file
  • ✓
    .zenodo.json file
    Found .zenodo.json file
  • ○
    DOI references
  • ✓
    Academic publication links
    Links to: zenodo.org
  • ✓
    Committers with academic emails
    4 of 14 committers (28.6%) from academic institutions
  • ○
    Institutional organization owner
  • ○
    JOSS paper metadata
  • ○
    Scientific vocabulary similarity
    Low similarity (12.3%) to scientific vocabulary

Keywords

hacktoberfest

Keywords from Contributors

mesh energy-system-model gravitational-lensing hydrology regionalization energy-system exoplanet particles data-profilers datacleaner
Last synced: 4 months ago · JSON representation ·

Repository

Notebook demonstrations and examples

Basic Info
Statistics
  • Stars: 13
  • Watchers: 5
  • Forks: 13
  • Open Issues: 28
  • Releases: 3
Topics
hacktoberfest
Created over 4 years ago · Last pushed 4 months ago
Metadata Files
Readme Contributing License Citation

README.md

IOOS CodeLab

The IOOS CodeLab is a collection of tutorials and examples of how to access and utilize the many IOOS technologies and data sources available. This site is geared towards scientists and environmental managers interested in “diving deep” into the numbers and creating original plots and data analysis. Most notebook examples are written in Python, however, we also have a growing number of notebooks written in Matlab, and R.

See the rendered version at https://ioos.github.io/iooscodelab

To suggest a notebook or ask questions please open an issue at: https://github.com/ioos/iooscodelab/issues

Citation

DOI

Build the JupyterBook locally

Resources:

  • Jupyter-book command line interface: https://jupyterbook.org/basics/build.html

Requirements:

  • Git: https://git-scm.com/book/en/v2/Getting-Started-Installing-Git
  • Jupyter{Book}: https://jupyterbook.org/intro.html
  • Web Browser

Installation

Install jupyter-book:

conda install jupyter-book

Clone the iooscodelab repository.

git clone https://github.com/ioos/ioos_code_lab.git

Once you have cloned the repository, you have all the required notebooks cloned onto your system (in the /jupyterbook/content directory).

Build the JupyterBook

Run the following command to build the JupyterBook.

jupyter-book build jupyterbook/

The command should be run relative to the jupyterbook/ directory.

If you are in the jupyterbook/ directory, you can build the book using

juyter-book build .

View the built JupyterBook

Your book's HTML pages are here:

jupyterbook\_build\html\

You can look at your book by opening this file in a browser:

jupyterbook\_build\html\index.html

Or, use the full link displayed in the terminal to view the website.

Clean up the book's generated files

To entirely remove the folders in the _build/ directory:

jupyter-book clean jupyterbook/ --all

Owner

  • Name: US Integrated Ocean Observing System
  • Login: ioos
  • Kind: organization
  • Email: data.ioos@noaa.gov
  • Location: Silver Spring, MD

Software, tools, and technical documentation supporting IOOS Data Management and Cyberinfrastructure (DMAC).

Citation (CITATION.cff) 

cff-version: 1.0.0
message: "If you need to cite this site please use the information below."
authors:
  - family-names: Fernandes
    given-names: Filipe
  - family-names: Bosch Webster
    given-names: Jennifer
  - family-names: Signell
    given-names: Rich
  - family-names: Biddle
    given-names: Mathew
  - family-names: Wilcox
    given-names: Kyle
  - family-names: Wengren
    given-names: Micah
title: IOOS Code Lab
version: v2.0.0
date-released: 2021-08-24

GitHub Events

Total
  • Issues event: 14
  • Watch event: 5
  • Delete event: 17
  • Issue comment event: 48
  • Push event: 53
  • Pull request review event: 3
  • Pull request event: 61
  • Fork event: 1
  • Create event: 18
Last Year
  • Issues event: 14
  • Watch event: 5
  • Delete event: 17
  • Issue comment event: 48
  • Push event: 53
  • Pull request review event: 3
  • Pull request event: 61
  • Fork event: 1
  • Create event: 18

Committers

Last synced: almost 2 years ago

All Time
  • Total Commits: 1,027
  • Total Committers: 14
  • Avg Commits per committer: 73.357
  • Development Distribution Score (DDS): 0.177
Past Year
  • Commits: 138
  • Committers: 6
  • Avg Commits per committer: 23.0
  • Development Distribution Score (DDS): 0.304
Top Committers
Name Email Commits
Filipe Fernandes o****f@g****m 845
lohithmunakala l****a@g****m 41
Mathew Biddle 8****e 41
pre-commit-ci[bot] 6****] 33
Mathew Biddle m****e@n****v 30
Rich Signell r****l@u****v 14
dependabot[bot] 4****] 7
Jennifer Bosch j****h@n****v 4
Jennifer Bosch j****a 3
Munakala Lohith 5****a 3
lohithmunakala l****a@g****m 2
Micah Wengren m****n@g****m 2
Kyle Wilcox k****e@a****m 1
Landung Setiawan l****s@u****u 1
Committer Domains (Top 20 + Academic)
noaa.gov: 2 uw.edu: 1 axiomdatascience.com: 1 usgs.gov: 1

Issues and Pull Requests

Last synced: 4 months ago

All Time
  • Total issues: 44
  • Total pull requests: 183
  • Average time to close issues: 8 months
  • Average time to close pull requests: about 1 month
  • Total issue authors: 7
  • Total pull request authors: 8
  • Average comments per issue: 2.5
  • Average comments per pull request: 1.78
  • Merged pull requests: 154
  • Bot issues: 0
  • Bot pull requests: 67
Past Year
  • Issues: 13
  • Pull requests: 48
  • Average time to close issues: 12 days
  • Average time to close pull requests: 3 days
  • Issue authors: 5
  • Pull request authors: 6
  • Average comments per issue: 0.69
  • Average comments per pull request: 1.35
  • Merged pull requests: 35
  • Bot issues: 0
  • Bot pull requests: 25
View more stats
Top Authors
Issue Authors
  • MathewBiddle (34)
  • ocefpaf (4)
  • laurabrenskelle (2)
  • rsignell-usgs (1)
  • emiliom (1)
  • conlin-matt (1)
  • sformel-usgs (1)
Pull Request Authors
  • ocefpaf (85)
  • pre-commit-ci[bot] (38)
  • dependabot[bot] (29)
  • MathewBiddle (25)
  • laurabrenskelle (3)
  • FloraSauerbronn (1)
  • Sakshamgupta90 (1)
  • mwengren (1)
Top Labels
Issue Labels
Notebook idea (13) enhancement (3) JupyterBook (1) bug (1)
Pull Request Labels
Bot (28) bug (1)

Dependencies

.github/workflows/deploy-docs.yml actions
  • actions/checkout v3 composite
  • mamba-org/provision-with-micromamba v15 composite
  • peaceiris/actions-gh-pages v3.9.2 composite
.github/workflows/test-env.yml actions
  • actions/checkout v3 composite
  • mamba-org/provision-with-micromamba v15 composite
.github/workflows/test_data_access_notebooks.yml actions
  • actions/checkout v3 composite
  • mamba-org/provision-with-micromamba v15 composite
.github/workflows/test_data_analysis_and_visualization_notebooks.yml actions
  • actions/checkout v3 composite
  • mamba-org/provision-with-micromamba v15 composite
.github/workflows/test_data_management_notebooks.yml actions
  • actions/checkout v3 composite
  • mamba-org/provision-with-micromamba v15 composite
.binder/environment.yml pypi
.github/workflows/test-install-instructions.yml actions
pyproject.toml pypi