hlatyping - 2.1.0 - Chewbacca

Added

• #169 - Parameter enumerations to specify the number of solutions provided by Optitype
• #179 - Add merging of resequenced fastq files

Changed

• #152 - Merge nf-core template updates up to 2.7.2
• #165 - Merge nf-core template updates up to 2.13.1
• #181 - Merge nf-core template updates up to 3.2
• #189 - Update nf-core modules

- Nextflow
Published by jonasscheid 11 months ago

hlatyping - 2.0.0 - Han Solo

Added

• #141 - Add OptiType results to MultiQC report

Changed

• #140 - Port pipeline to DSL2
• #140 - Merge nf-core template updates up to 2.6
• #140 - Support for BAM and FASTQ input in the same run
• #140 - Support for DNA and RNA input in the same run

Fixed

See CHANGELOG for more information.

- Nextflow
Published by christopher-mohr over 3 years ago

hlatyping - 1.2.0 - Lead-sparrow

Added

• #91 - Add pipeline parameter schema
• #78 - Add GitHub actions instead of Travis CI
• #73 - Add social preview image

Changed

• #84, #91 - Change input parameters (--input instead of --reads, the parameters --genome and --fasta are deprecated for this pipeline)
• #89, #90 - Update to nf-core template v1.10.2
• #81, #82 - Update to nf-core template v1.9

Fixed

• #79 - Fix mapping index issue #68

See CHANGELOG for more information.

- Nextflow
Published by christopher-mohr over 5 years ago

hlatyping - 1.1.5 - Patch Release

1.1.5 - Patch release - 2019-06-27

• Mini Bugfix Release for MultiQC running in local execution mode

- Nextflow
Published by apeltzer over 6 years ago

hlatyping - 1.1.4 - Patch Release

1.1.4 - Patch release - 2019-03-07

• Fix issues with centralized configs
• Fix with pandas, pinning to numpy 1.15.4 instead of 1.16.0

- Nextflow
Published by apeltzer almost 7 years ago

hlatyping - 1.1.3 - Patch Release

1.1.3 - Patch release - 2019-02-04

• Multiple smaller bugfixes, cleaned up code basis
• #48 - Utilizes RNA/DNA reference genome for remapping correctly

- Nextflow
Published by apeltzer about 7 years ago

hlatyping - Patch release

• Fix #37

- Nextflow
Published by sven1103 about 7 years ago

hlatyping - Patch release

• Fix #30
• Removed support to pull from Singularity Hub directly, when using the profile singularity. For now, Nextflow will pull the container image from Docker Hub and create the Singularity container on the local host.

- Nextflow
Published by sven1103 over 7 years ago

hlatyping - Aqua-titanium-crab

• Fix #17
• Fix #13
• Fix #12
• New profile full-trace that can be used for full trace info broadcast with with Nextflow's weblog feature
• New profile cfc with setups for the core facility cluster at QBiC

- Nextflow
Published by sven1103 over 7 years ago

hlatyping - First major release of nf-core/hlatyping

- Nextflow
Published by sven1103 over 7 years ago

hlatyping - Pre-release of hlatyping pipeline

- Nextflow
Published by sven1103 over 7 years ago