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Recent Releases of rnasplice

rnasplice - nf-core/rnasplice 1.0.4

What's Changed

  • Fix incorrect assignment of cluster groups by @jma1991 in https://github.com/nf-core/rnasplice/pull/132

Full Changelog: https://github.com/nf-core/rnasplice/compare/1.0.3...1.0.4

- Nextflow
Published by jma1991 almost 2 years ago

rnasplice - nf-core/rnasplice 1.0.3

What's Changed

  • Move read.table out of loop by @jma1991 in https://github.com/nf-core/rnasplice/pull/121
  • Stop R converting sample names with '-' in string by @jma1991 in https://github.com/nf-core/rnasplice/pull/124
  • Patch fix v1.0.3 by @jma1991 in https://github.com/nf-core/rnasplice/pull/125

Full Changelog: https://github.com/nf-core/rnasplice/compare/1.0.2...1.0.3

- Nextflow
Published by jma1991 almost 2 years ago

rnasplice - nf-core/rnasplice 1.0.2

What's Changed

  • Specify pScreenAdjusted argument depending on analysis method by @jma1991 in https://github.com/nf-core/rnasplice/pull/113
  • Add missing example contrastsheet by @jma1991 in https://github.com/nf-core/rnasplice/pull/114
  • Important! Template update for nf-core/tools v2.11.1 by @nf-core-bot in https://github.com/nf-core/rnasplice/pull/110
  • Patch fix v1.0.2 by @jma1991 in https://github.com/nf-core/rnasplice/pull/115
  • Release of patch fix v1.0.2 by @jma1991 in https://github.com/nf-core/rnasplice/pull/116

Full Changelog: https://github.com/nf-core/rnasplice/compare/1.0.1...1.0.2

- Nextflow
Published by jma1991 about 2 years ago

rnasplice - nf-core/rnasplice 1.0.1

What's Changed

  • add zenodo doi by @maxulysse in https://github.com/nf-core/rnasplice/pull/96
  • bump version by @jma1991 in https://github.com/nf-core/rnasplice/pull/95
  • cast command args to numeric by @jma1991 in https://github.com/nf-core/rnasplice/pull/100
  • Revert "cast command args to numeric" by @jma1991 in https://github.com/nf-core/rnasplice/pull/101
  • patch run drimseq filter by @jma1991 in https://github.com/nf-core/rnasplice/pull/102
  • Patch v1.0.1 by @jma1991 in https://github.com/nf-core/rnasplice/pull/103

New Contributors

  • @maxulysse made their first contribution in https://github.com/nf-core/rnasplice/pull/96

Full Changelog: https://github.com/nf-core/rnasplice/compare/1.0.0...1.0.1

- Nextflow
Published by jma1991 over 2 years ago

rnasplice - nf-core/rnasplice 1.0.0

What's Changed

  • Sl 29 implement featurecount module in https://github.com/nf-core/rnasplice/pull/1
  • Sl 35 rmats single condition by @bensouthgate in https://github.com/nf-core/rnasplice/pull/2
  • SL-33 implement edge deu module in https://github.com/nf-core/rnasplice/pull/3
  • SL-77 Add .github files in https://github.com/nf-core/rnasplice/pull/4
  • SL-78 update nf-core module structure imports in https://github.com/nf-core/rnasplice/pull/5
  • SL-70 Add strandedness,condition and validation code in https://github.com/nf-core/rnasplice/pull/6
  • SL-82 add groovy functions and include valid_params in https://github.com/nf-core/rnasplice/pull/7
  • SL-84 parametize gff type / add process_single tag in https://github.com/nf-core/rnasplice/pull/8
  • SL-86 refactor ch_samplesheet in https://github.com/nf-core/rnasplice/pull/9
  • SL-93 refactor rmarts input checks in https://github.com/nf-core/rnasplice/pull/10
  • SL-95 format bin python files in https://github.com/nf-core/rnasplice/pull/11
  • Sl 96 refactor aligner conditional behaviour in https://github.com/nf-core/rnasplice/pull/12
  • Sl 102 add condition check for rmats to groovy script in https://github.com/nf-core/rnasplice/pull/13
  • SL-101 add suppa parameter check in https://github.com/nf-core/rnasplice/pull/14
  • SL-107 typo correction in dex seq by @asmaali98 in https://github.com/nf-core/rnasplice/pull/17
  • SL-98 add rmats mulled container, resolve dexseq bug by @asmaali98 in https://github.com/nf-core/rnasplice/pull/15
  • SL-105 add getchromsizes to modules conf in https://github.com/nf-core/rnasplice/pull/18
  • SL-108 add single prep to withname pattern in https://github.com/nf-core/rnasplice/pull/19
  • Sl 64 write GitHub documentation by @bensouthgate in https://github.com/nf-core/rnasplice/pull/20
  • SL-106 check denominator specified correctly in https://github.com/nf-core/rnasplice/pull/21
  • SL-112 add warning for user in https://github.com/nf-core/rnasplice/pull/22
  • SL-104 fix withname pattern in https://github.com/nf-core/rnasplice/pull/23
  • SL-98 rmats read length correction by @asmaali98 in https://github.com/nf-core/rnasplice/pull/24
  • SL-118 respec modules conf in https://github.com/nf-core/rnasplice/pull/25
  • SL-119 add gtfgenefilter to modules.config in https://github.com/nf-core/rnasplice/pull/26
  • SL-117 fix featurecounts spec in https://github.com/nf-core/rnasplice/pull/27
  • Sl 64 write GitHub documentation by @bensouthgate in https://github.com/nf-core/rnasplice/pull/28
  • Use script with echo + sed instead of exec with task.WorkDir for rMATS create_bamlist by @olgabot in https://github.com/nf-core/rnasplice/pull/29
  • SL-17 Include starsalmonquant rule in modules.config by @claire-prince in https://github.com/nf-core/rnasplice/pull/30
  • SL-21 Include enable.conda in configuration by @claire-prince in https://github.com/nf-core/rnasplice/pull/32
  • SL-18 Update SAMTOOLS_INDEX publishDir pattern by @claire-prince in https://github.com/nf-core/rnasplice/pull/34
  • SL-13 Add param to turn off DEXSeq.gff output save by @claire-prince in https://github.com/nf-core/rnasplice/pull/31
  • Merging template updates by @bensouthgate in https://github.com/nf-core/rnasplice/pull/37
  • Important! Template update for nf-core/tools v2.7.2 by @nf-core-bot in https://github.com/nf-core/rnasplice/pull/36
  • remove enable_conda param by @jma1991 in https://github.com/nf-core/rnasplice/pull/38
  • fix samplesheet location by @jma1991 in https://github.com/nf-core/rnasplice/pull/40
  • fix duplicate exons and star segfault by @jma1991 in https://github.com/nf-core/rnasplice/pull/41
  • Fix module tests by @jma1991 in https://github.com/nf-core/rnasplice/pull/42
  • fixed some pipeline and module tests by @jma1991 in https://github.com/nf-core/rnasplice/pull/43
  • update singularity and docker containers by @jma1991 in https://github.com/nf-core/rnasplice/pull/45
  • add basic tower.yml file by @jma1991 in https://github.com/nf-core/rnasplice/pull/46
  • remove default values specified as None by @jma1991 in https://github.com/nf-core/rnasplice/pull/47
  • Test full by @jma1991 in https://github.com/nf-core/rnasplice/pull/48
  • update process capacity by @jma1991 in https://github.com/nf-core/rnasplice/pull/49
  • Bam and visualisation by @jma1991 in https://github.com/nf-core/rnasplice/pull/50
  • v1 of contrasts by @jma1991 in https://github.com/nf-core/rnasplice/pull/53
  • Merging template updates by @jma1991 in https://github.com/nf-core/rnasplice/pull/54
  • Important! Template update for nf-core/tools v2.8 by @nf-core-bot in https://github.com/nf-core/rnasplice/pull/51
  • fix lint tests v1 by @jma1991 in https://github.com/nf-core/rnasplice/pull/55
  • release steps by @jma1991 in https://github.com/nf-core/rnasplice/pull/56
  • prettier CHANGELOG by @jma1991 in https://github.com/nf-core/rnasplice/pull/59
  • Fixed params.gencode in prepare_genome - issue #60 by @valentinoruggieri in https://github.com/nf-core/rnasplice/pull/61
  • Revert "Fixed params.gencode in prepare_genome - issue #60" by @jma1991 in https://github.com/nf-core/rnasplice/pull/62
  • remove sniffer by @jma1991 in https://github.com/nf-core/rnasplice/pull/64
  • Fixed gencode issues by @valentinoruggieri in https://github.com/nf-core/rnasplice/pull/65
  • Revert "Fixed gencode issues" by @jma1991 in https://github.com/nf-core/rnasplice/pull/66
  • resolve gencode fix by @jma1991 in https://github.com/nf-core/rnasplice/pull/67
  • initial pass of fixes by @jma1991 in https://github.com/nf-core/rnasplice/pull/68
  • V1.0.0 release fixes by @jma1991 in https://github.com/nf-core/rnasplice/pull/77
  • Merging template updates by @jma1991 in https://github.com/nf-core/rnasplice/pull/79
  • Important! Template update for nf-core/tools v2.9 by @nf-core-bot in https://github.com/nf-core/rnasplice/pull/73
  • Fixes MISO scratch/launch directory and gffread issue by @jma1991 in https://github.com/nf-core/rnasplice/pull/80
  • keep contrasts as array when only one level by @jma1991 in https://github.com/nf-core/rnasplice/pull/82
  • suppa fix attempt 1 by @jma1991 in https://github.com/nf-core/rnasplice/pull/86
  • replace across with combine to mimic SQL join by @jma1991 in https://github.com/nf-core/rnasplice/pull/87
  • refactor rmats contrasts by @jma1991 in https://github.com/nf-core/rnasplice/pull/88
  • Potential fix for MISO index issue by @jma1991 in https://github.com/nf-core/rnasplice/pull/91
  • Important! Template update for nf-core/tools v2.10 by @nf-core-bot in https://github.com/nf-core/rnasplice/pull/92
  • pre-release fixes by @jma1991 in https://github.com/nf-core/rnasplice/pull/94
  • 1.0.0 release of nf-core/rnasplice pipeline by @jma1991 in https://github.com/nf-core/rnasplice/pull/57

New Contributors

  • @bensouthgate made their first contribution in https://github.com/nf-core/rnasplice/pull/2
  • @asmaali98 made their first contribution in https://github.com/nf-core/rnasplice/pull/17
  • @olgabot made their first contribution in https://github.com/nf-core/rnasplice/pull/29
  • @claire-prince made their first contribution in https://github.com/nf-core/rnasplice/pull/30
  • @nf-core-bot made their first contribution in https://github.com/nf-core/rnasplice/pull/36
  • @jma1991 made their first contribution in https://github.com/nf-core/rnasplice/pull/38
  • @valentinoruggieri made their first contribution in https://github.com/nf-core/rnasplice/pull/61

Full Changelog: https://github.com/nf-core/rnasplice/commits/1.0.0

- Nextflow
Published by jma1991 over 2 years ago