riboseq - nf-core/riboseq v1.1.0 - Bisturbile Aramids

What's Changed

• Bumping to 1.1.0dev by @pinin4fjords in https://github.com/nf-core/riboseq/pull/58
• Empty ref to samtools sort by @JackCurragh in https://github.com/nf-core/riboseq/pull/60
• feat(metro-map): update metro map for better cohesion with rnaseq by @maxulysse in https://github.com/nf-core/riboseq/pull/61
• Important! Template update for nf-core/tools v2.14.1 by @nf-core-bot in https://github.com/nf-core/riboseq/pull/63
• Important! Template update for nf-core/tools v3.0.2 by @nf-core-bot in https://github.com/nf-core/riboseq/pull/71
• add pipeline level nf-test snapshot by @maxulysse in https://github.com/nf-core/riboseq/pull/73
• fixes #65 (renamed subworkflow, add missing bai ch) by @iraiosub in https://github.com/nf-core/riboseq/pull/75
• update RIBOTRICER_PREPAREORFS by @iraiosub in https://github.com/nf-core/riboseq/pull/77
• Move UMI handling to subworkflow, update modules and subworkflows, deal with docs and config fallout by @pinin4fjords in https://github.com/nf-core/riboseq/pull/79
• fix skip_ribotish by @pinin4fjords in https://github.com/nf-core/riboseq/pull/83
• Rationalise sorted bam/bai publishing by @pinin4fjords in https://github.com/nf-core/riboseq/pull/85
• Important! Template update for nf-core/tools v3.2.0 by @nf-core-bot in https://github.com/nf-core/riboseq/pull/86
• "--subsettocontrast_samples" must be true for anota2seq by @pinin4fjords in https://github.com/nf-core/riboseq/pull/91
• Bump anota2seq for ordering fix by @pinin4fjords in https://github.com/nf-core/riboseq/pull/92
• Bump anota2seq for dollar fix by @pinin4fjords in https://github.com/nf-core/riboseq/pull/93
• Fix value channel for multi-contrast case by @pinin4fjords in https://github.com/nf-core/riboseq/pull/94
• Bump versions pre-release to 1.1.0 by @pinin4fjords in https://github.com/nf-core/riboseq/pull/87
• Fix minor linting issue for release by @pinin4fjords in https://github.com/nf-core/riboseq/pull/96
• Remove the onpullrequest_target trigger from the download test. by @pinin4fjords in https://github.com/nf-core/riboseq/pull/97
• Bump gunzip due to release CI failure by @pinin4fjords in https://github.com/nf-core/riboseq/pull/98
• Remove conda from release CI by @pinin4fjords in https://github.com/nf-core/riboseq/pull/99
• Fix gunzip in snapshot by @pinin4fjords in https://github.com/nf-core/riboseq/pull/100
• Dev -> master for v1.1.0 by @pinin4fjords in https://github.com/nf-core/riboseq/pull/95

New Contributors

• @iraiosub made their first contribution in https://github.com/nf-core/riboseq/pull/75

Full Changelog: https://github.com/nf-core/riboseq/compare/1.0.1...1.1.0

- Nextflow
Published by pinin4fjords about 1 year ago

riboseq - nf-core/riboseq v1.0.1 - Augmented Aventurine

What's Changed

• Bump to v1.0.1 and set Zenodo by @pinin4fjords in https://github.com/nf-core/riboseq/pull/53
• Add legal logos and first metro map by @FelixKrueger in https://github.com/nf-core/riboseq/pull/54
• Prerelease v1.0.1 by @pinin4fjords in https://github.com/nf-core/riboseq/pull/55
• fixed svgs to match the exported pngs by @JackCurragh in https://github.com/nf-core/riboseq/pull/57
• Dev -> master for v1.0.1 by @pinin4fjords in https://github.com/nf-core/riboseq/pull/56

Full Changelog: https://github.com/nf-core/riboseq/compare/1.0.0...1.0.1

- Nextflow
Published by pinin4fjords about 2 years ago

riboseq - nf-core/riboseq v1.0.0 - Altruistic Aventurine

What's Changed

• Restart dev from a new template by @maxulysse in https://github.com/nf-core/riboseq/pull/2
• Restart dev by @maxulysse in https://github.com/nf-core/riboseq/pull/3
• Initialise testing and base template functionality by @pinin4fjords in https://github.com/nf-core/riboseq/pull/4
• Fix lint by @maxulysse in https://github.com/nf-core/riboseq/pull/5
• Important! Template update for nf-core/tools v2.11.1 by @nf-core-bot in https://github.com/nf-core/riboseq/pull/7
• Preprocessing from rnaseq by @pinin4fjords in https://github.com/nf-core/riboseq/pull/8
• Take rnaseq preprocessing workflow from nf-core by @pinin4fjords in https://github.com/nf-core/riboseq/pull/10
• Important! Template update for nf-core/tools v2.12 by @nf-core-bot in https://github.com/nf-core/riboseq/pull/9
• Add alignment via STAR + postprocessing by @pinin4fjords in https://github.com/nf-core/riboseq/pull/12
• Nf core template merge 2.13 (manual) by @pinin4fjords in https://github.com/nf-core/riboseq/pull/32
• Fix order of preprocessing steps by @pinin4fjords in https://github.com/nf-core/riboseq/pull/34
• Sortmerna: index once by @pinin4fjords in https://github.com/nf-core/riboseq/pull/35
• Bump bbsplit module to prevent index overwrites by @pinin4fjords in https://github.com/nf-core/riboseq/pull/36
• Important! Template update for nf-core/tools v2.13.1 by @nf-core-bot in https://github.com/nf-core/riboseq/pull/38
• Integrate Ribo-TISH by @pinin4fjords in https://github.com/nf-core/riboseq/pull/39
• Ribotricer orf prediction by @pinin4fjords in https://github.com/nf-core/riboseq/pull/40
• Amend credits statement by @FelixKrueger in https://github.com/nf-core/riboseq/pull/41
• Add alignment based quantification with Salmon by @pinin4fjords in https://github.com/nf-core/riboseq/pull/42
• Add translational efficiency analysis with anota2seq by @pinin4fjords in https://github.com/nf-core/riboseq/pull/43
• Fix lack of fastqc in multiqc report by @pinin4fjords in https://github.com/nf-core/riboseq/pull/44
• Update CI from rnaseq, strip unused rnaseq components by @pinin4fjords in https://github.com/nf-core/riboseq/pull/45
• Prerelease changes v1.0.0 by @pinin4fjords in https://github.com/nf-core/riboseq/pull/46
• Remove stub option from download in CI by @pinin4fjords in https://github.com/nf-core/riboseq/pull/48
• Fix CI by @pinin4fjords in https://github.com/nf-core/riboseq/pull/49
• changed logos to the custom w/ ribosome by @JackCurragh in https://github.com/nf-core/riboseq/pull/51
• updated changelog by @JackCurragh in https://github.com/nf-core/riboseq/pull/52
• V1.0.0 release review fixes by @pinin4fjords in https://github.com/nf-core/riboseq/pull/50
• Dev -> master for v1.0.0 by @pinin4fjords in https://github.com/nf-core/riboseq/pull/47

New Contributors

• @maxulysse made their first contribution in https://github.com/nf-core/riboseq/pull/2
• @pinin4fjords made their first contribution in https://github.com/nf-core/riboseq/pull/4
• @nf-core-bot made their first contribution in https://github.com/nf-core/riboseq/pull/7
• @FelixKrueger made their first contribution in https://github.com/nf-core/riboseq/pull/41
• @JackCurragh made their first contribution in https://github.com/nf-core/riboseq/pull/51

Full Changelog: https://github.com/nf-core/riboseq/commits/1.0.0

- Nextflow
Published by pinin4fjords about 2 years ago