Recent Releases of taxonium-component

taxonium-component - v2.1.12

What's Changed

  • Revert recent commits by @theosanderson in https://github.com/theosanderson/taxonium/pull/749
  • update polyfill by @theosanderson in https://github.com/theosanderson/taxonium/pull/751
  • Update development instructions to use npm instead of yarn by @theosanderson in https://github.com/theosanderson/taxonium/pull/752
  • Pin react stuff to 19.1.1 consistently by @theosanderson in https://github.com/theosanderson/taxonium/pull/755

Full Changelog: https://github.com/theosanderson/taxonium/compare/v2.1.11...v2.1.12

- TypeScript
Published by theosanderson 6 months ago

taxonium-component - v2.1.11

What's Changed

  • Fix minimap color updates when editing legend by @theosanderson in https://github.com/theosanderson/taxonium/pull/741
  • fix version issues so npm force no longer needed by @theosanderson in https://github.com/theosanderson/taxonium/pull/746
  • Watch taxoniumdatahandling in storybook by @theosanderson in https://github.com/theosanderson/taxonium/pull/744
  • chore: install data handling in release workflow by @theosanderson in https://github.com/theosanderson/taxonium/pull/747

Full Changelog: https://github.com/theosanderson/taxonium/compare/v2.1.10...v2.1.11

- TypeScript
Published by theosanderson 6 months ago

taxonium-component - v2.1.10

What's Changed

  • memoize whole taxonium component by @theosanderson in https://github.com/theosanderson/taxonium/pull/733

Full Changelog: https://github.com/theosanderson/taxonium/compare/v2.1.9...v2.1.10

- TypeScript
Published by theosanderson 7 months ago

taxonium-component - v2.1.9

What's Changed

  • Remove console.log debug statements by @theosanderson in https://github.com/theosanderson/taxonium/pull/731

Full Changelog: https://github.com/theosanderson/taxonium/compare/v2.1.8...v2.1.9

- TypeScript
Published by theosanderson 7 months ago

taxonium-component - v2.1.8

What's Changed

  • don't force title change from taxonium component by @theosanderson in https://github.com/theosanderson/taxonium/pull/728
  • allow side bar to be hidden by default by @theosanderson in https://github.com/theosanderson/taxonium/pull/729

Full Changelog: https://github.com/theosanderson/taxonium/compare/v2.1.7...v2.1.8

- TypeScript
Published by theosanderson 7 months ago

taxonium-component - v2.1.7

What's Changed

  • fix descendants menu by @theosanderson in https://github.com/theosanderson/taxonium/pull/725

Full Changelog: https://github.com/theosanderson/taxonium/compare/v2.1.6...v2.1.7

- TypeScript
Published by theosanderson 7 months ago

taxonium-component - v2.1.6

What's Changed

  • add events to taxonium component by @theosanderson in https://github.com/theosanderson/taxonium/pull/724

Full Changelog: https://github.com/theosanderson/taxonium/compare/v2.1.5...v2.1.6

- TypeScript
Published by theosanderson 7 months ago

taxonium-component - v2.1.5

What's Changed

  • Disable snap build to hopefully make electron available for linux by @theosanderson in https://github.com/theosanderson/taxonium/pull/722

Full Changelog: https://github.com/theosanderson/taxonium/compare/v2.1.4...v2.1.5

- TypeScript
Published by theosanderson 8 months ago

taxonium-component - v2.1.4

What's Changed

  • Fix query stuff in electron by @theosanderson in https://github.com/theosanderson/taxonium/pull/720

Full Changelog: https://github.com/theosanderson/taxonium/compare/v2.1.3...v2.1.4

- TypeScript
Published by theosanderson 8 months ago

taxonium-component - v2.1.3

What's Changed

  • Clamp color scale input by @theosanderson in https://github.com/theosanderson/taxonium/pull/714
  • Show backend URL in electron by @theosanderson in https://github.com/theosanderson/taxonium/pull/719

Full Changelog: https://github.com/theosanderson/taxonium/compare/v2.1.2...v2.1.3

- TypeScript
Published by theosanderson 8 months ago

taxonium-component -

What's Changed

Please upgrade to use the latest Taxonium app: old versions will not work well. Remember you need to unquarantine on MacOS: https://docs.taxonium.org/en/latest/app.html

  • Add Claude Code GitHub Workflow by @theosanderson in https://github.com/theosanderson/taxonium/pull/701
  • Improve error handling by @theosanderson in https://github.com/theosanderson/taxonium/pull/705
  • Update component.md by @theosanderson in https://github.com/theosanderson/taxonium/pull/707
  • Update component.md by @theosanderson in https://github.com/theosanderson/taxonium/pull/709
  • Overhaul Electron app and fix some stuff by @theosanderson in https://github.com/theosanderson/taxonium/pull/712

Full Changelog: https://github.com/theosanderson/taxonium/compare/v2.1.0...v2.1.1

- TypeScript
Published by theosanderson 8 months ago

taxonium-component - v2.1.1

What's Changed

Please upgrade to use the latest Taxonium app: old versions will not work well. Remember you need to unquarantine on MacOS: https://docs.taxonium.org/en/latest/app.html

  • Add Claude Code GitHub Workflow by @theosanderson in https://github.com/theosanderson/taxonium/pull/701
  • Improve error handling by @theosanderson in https://github.com/theosanderson/taxonium/pull/705
  • Update component.md by @theosanderson in https://github.com/theosanderson/taxonium/pull/707
  • Update component.md by @theosanderson in https://github.com/theosanderson/taxonium/pull/709
  • Overhaul Electron app and fix some stuff by @theosanderson in https://github.com/theosanderson/taxonium/pull/712

Full Changelog: https://github.com/theosanderson/taxonium/compare/v2.1.0...v2.1.1

- TypeScript
Published by theosanderson 8 months ago

taxonium-component - v2.1.0

What's Changed

  • Upgrade lots of dependencies, move to Typescript, upgrade to React 19 by @theosanderson in https://github.com/theosanderson/taxonium/pull/700

Full Changelog: https://github.com/theosanderson/taxonium/compare/v2.0.227...v2.1.0

- TypeScript
Published by theosanderson 9 months ago

taxonium-component - v2.0.227

What's Changed

  • Add artifact names in the electron release workflow for uploaded artifacts by @theosanderson in https://github.com/theosanderson/taxonium/pull/658

Full Changelog: https://github.com/theosanderson/taxonium/compare/v2.0.226...v2.0.227

- TypeScript
Published by theosanderson 11 months ago

taxonium-component -

- TypeScript
Published by theosanderson 11 months ago

taxonium-component - v2.0.225

What's Changed

  • Configure dependabot for GitHub Actions by @theosanderson in https://github.com/theosanderson/taxonium/pull/651

Full Changelog: https://github.com/theosanderson/taxonium/compare/v2.0.224...v2.0.225

- TypeScript
Published by theosanderson 11 months ago

taxonium-component - v2.0.224

What's Changed

  • Reenable docker build for backend by @theosanderson in https://github.com/theosanderson/taxonium/pull/623
  • URL encode search queries by @theosanderson in https://github.com/theosanderson/taxonium/pull/624
  • Reduce mutation chunk size by @theosanderson in https://github.com/theosanderson/taxonium/pull/625
  • Move from subdomains for special hosted builds to just URLs by @theosanderson in https://github.com/theosanderson/taxonium/pull/627
  • Add tree selection menu next to info icon by @theosanderson in https://github.com/theosanderson/taxonium/pull/629
  • Update App.jsx by @theosanderson in https://github.com/theosanderson/taxonium/pull/630
  • Update App.jsx by @theosanderson in https://github.com/theosanderson/taxonium/pull/631
  • hydrated muts by @theosanderson in https://github.com/theosanderson/taxonium/pull/638
  • remove url on fail by @theosanderson in https://github.com/theosanderson/taxonium/pull/639
  • Icons and descriptions for disparate maintainers by @theosanderson in https://github.com/theosanderson/taxonium/pull/632
  • On taxonium_website when the little icons display next to each tree they should be part of the link to the tree by @theosanderson in https://github.com/theosanderson/taxonium/pull/640
  • UShER mpox? by @theosanderson in https://github.com/theosanderson/taxonium/pull/643
  • Add M. tuberculosis SRA UShER tree by @AngieHinrichs in https://github.com/theosanderson/taxonium/pull/645
  • Add H5N1 D1.1 outbreak UShER tree by @AngieHinrichs in https://github.com/theosanderson/taxonium/pull/647

Full Changelog: https://github.com/theosanderson/taxonium/compare/v2.0.223...v2.0.224

- TypeScript
Published by theosanderson 11 months ago

taxonium-component -

Adds a missing dependency to complete the fix to the Taxonium backend. Thank you to @AngieHinrichs for reporting issues.

- TypeScript
Published by theosanderson over 1 year ago

taxonium-component - v2.0.222

What's Changed

  • Add extra special case to hash color by @theosanderson in https://github.com/theosanderson/taxonium/pull/620
  • Hotfix Taxonium backend after recent changes by @theosanderson in https://github.com/theosanderson/taxonium/pull/621

Full Changelog: https://github.com/theosanderson/taxonium/compare/v2.0.221...v2.0.222

- TypeScript
Published by theosanderson over 1 year ago

taxonium-component - v2.0.221

What's Changed

Taxonium now supports trees with more than 1GB of JSON of unique mutations, e.g. for Mycobacterium TB

  • add color ramp key by @theosanderson in https://github.com/theosanderson/taxonium/pull/611
  • Add helm chart for taxonium backend by @theosanderson in https://github.com/theosanderson/taxonium/pull/615
  • Backend: remove SID validation code by @theosanderson in https://github.com/theosanderson/taxonium/pull/616
  • New server side endpoint for getting (all) mutations, which provides data in chunks by @theosanderson in https://github.com/theosanderson/taxonium/pull/617
  • Fix mutation chunking PR by @theosanderson in https://github.com/theosanderson/taxonium/pull/618
  • Split stream and process mutations with streaming JSON parsing by @theosanderson in https://github.com/theosanderson/taxonium/pull/619

Full Changelog: https://github.com/theosanderson/taxonium/compare/v2.0.119...v2.0.221

- TypeScript
Published by theosanderson over 1 year ago

taxonium-component -

- TypeScript
Published by theosanderson over 1 year ago

taxonium-component -

- TypeScript
Published by theosanderson over 1 year ago

taxonium-component - v2.0.118

- TypeScript
Published by theosanderson over 1 year ago

taxonium-component - v2.0.117

What's Changed

  • feat: Color ramps by @theosanderson in https://github.com/theosanderson/taxonium/pull/604
  • try to fix color bug by @theosanderson in https://github.com/theosanderson/taxonium/pull/605
  • Add a new option --chronumentaladdinferred_date by @AngieHinrichs in https://github.com/theosanderson/taxonium/pull/608

New Contributors

  • @AngieHinrichs made their first contribution in https://github.com/theosanderson/taxonium/pull/608

Full Changelog: https://github.com/theosanderson/taxonium/compare/v2.0.116...v2.0.117

- TypeScript
Published by theosanderson over 1 year ago

taxonium-component - v2.0.116

What's Changed

  • expand NS by @theosanderson in https://github.com/theosanderson/taxonium/pull/573
  • Update useColor.jsx by @theosanderson in https://github.com/theosanderson/taxonium/pull/579
  • Correct display of NS tree description by @theosanderson in https://github.com/theosanderson/taxonium/pull/580
  • Increasing outer bounds by @theosanderson in https://github.com/theosanderson/taxonium/pull/584
  • add description for nextstrain by @theosanderson in https://github.com/theosanderson/taxonium/pull/586
  • Update SearchPanel.jsx by @theosanderson in https://github.com/theosanderson/taxonium/pull/587
  • md_links by @theosanderson in https://github.com/theosanderson/taxonium/pull/588
  • Md links by @theosanderson in https://github.com/theosanderson/taxonium/pull/589
  • doc: recommend explicit /usr/bin/xattr to prevent error by @corneliusroemer in https://github.com/theosanderson/taxonium/pull/595
  • bump precommit by @theosanderson in https://github.com/theosanderson/taxonium/pull/602
  • Enforce that metadata key column is a string by @theosanderson in https://github.com/theosanderson/taxonium/pull/601

New Contributors

  • @corneliusroemer made their first contribution in https://github.com/theosanderson/taxonium/pull/595

Full Changelog: https://github.com/theosanderson/taxonium/compare/v2.0.115...v2.0.116

- TypeScript
Published by theosanderson over 1 year ago

taxonium-component -

Fixes packaging of Taxonium Desktop App for macOS

- TypeScript
Published by theosanderson about 2 years ago

taxonium-component -

Pins biopython to fix a taxoniumtools issue.

*For macOS taxonium app please use an earlier release: v2.0.112 *

- TypeScript
Published by theosanderson about 2 years ago

taxonium-component -

[Use the preceding version for now] This release should remove all dependencies (except react from the Taxonium component)

- TypeScript
Published by theosanderson about 2 years ago

taxonium-component - v2.0.112

What's Changed

  • Lots of added colour customisability by @theosanderson in https://github.com/theosanderson/taxonium/pull/519
  • More useful error message for duplicate key by @theosanderson in https://github.com/theosanderson/taxonium/pull/521
  • Fix issue where you could not pan in the minimap by @theosanderson in https://github.com/theosanderson/taxonium/pull/522
  • Fix genotype colour issue by @theosanderson in https://github.com/theosanderson/taxonium/pull/524
  • Add SVG export!!!! by @theosanderson in https://github.com/theosanderson/taxonium/pull/525
  • Fix hollow shapes for illustrator import in svg by @theosanderson in https://github.com/theosanderson/taxonium/pull/527

Full Changelog: https://github.com/theosanderson/taxonium/compare/v2.0.111...v2.0.112

- TypeScript
Published by theosanderson over 2 years ago

taxonium-component - v2.0.111

What's Changed

  • Fix a bug introduced recently where the root wasn't correctly annotated with AAs by @theosanderson in https://github.com/theosanderson/taxonium/pull/516 ________
  • Cleanup debug print statements in taxoniumtools by @theosanderson in https://github.com/theosanderson/taxonium/pull/507
  • Update Key.jsx by @theosanderson in https://github.com/theosanderson/taxonium/pull/509
  • Fix an issue where things would run off screen by @theosanderson in https://github.com/theosanderson/taxonium/pull/512

Full Changelog: https://github.com/theosanderson/taxonium/compare/v2.0.110...v2.0.111

- TypeScript
Published by theosanderson over 2 years ago

taxonium-component - v2.0.110

What's Changed

  • Fix the fix: further fix to mutations logic by @theosanderson in https://github.com/theosanderson/taxonium/pull/506

Full Changelog: https://github.com/theosanderson/taxonium/compare/v2.0.109...v2.0.110

- TypeScript
Published by theosanderson over 2 years ago

taxonium-component - v2.0.109

What's Changed

  • Update taxoniumtools.md by @theosanderson in https://github.com/theosanderson/taxonium/pull/504
  • Fix calculation of past mutations by @theosanderson in https://github.com/theosanderson/taxonium/pull/505

Full Changelog: https://github.com/theosanderson/taxonium/compare/v2.0.108...v2.0.109

- TypeScript
Published by theosanderson over 2 years ago

taxonium-component - v2.0.108

What's Changed

  • Support compound features by @theosanderson in https://github.com/theosanderson/taxonium/pull/500

Full Changelog: https://github.com/theosanderson/taxonium/compare/v2.0.107...v2.0.108

- TypeScript
Published by theosanderson over 2 years ago

taxonium-component - v2.0.107

What's Changed

  • Update README.md by @theosanderson in https://github.com/theosanderson/taxonium/pull/491
  • hide taxonium logo on mob by @theosanderson in https://github.com/theosanderson/taxonium/pull/495
  • Add support for nexus props by @theosanderson in https://github.com/theosanderson/taxonium/pull/497
  • Update jstree.js by @theosanderson in https://github.com/theosanderson/taxonium/pull/498
  • fix nexus annotations implementation by @theosanderson in https://github.com/theosanderson/taxonium/pull/503

Full Changelog: https://github.com/theosanderson/taxonium/compare/v2.0.106...v2.0.107

- TypeScript
Published by theosanderson over 2 years ago

taxonium-component -

- TypeScript
Published by theosanderson over 2 years ago

taxonium-component -

- TypeScript
Published by theosanderson over 2 years ago

taxonium-component -

- TypeScript
Published by theosanderson over 2 years ago

taxonium-component -

- TypeScript
Published by theosanderson over 2 years ago

taxonium-component -

- TypeScript
Published by theosanderson over 2 years ago

taxonium-component -

- TypeScript
Published by theosanderson over 2 years ago

taxonium-component -

- TypeScript
Published by theosanderson over 2 years ago

taxonium-component -

- TypeScript
Published by theosanderson over 2 years ago

taxonium-component -

- TypeScript
Published by theosanderson over 2 years ago

taxonium-component -

- TypeScript
Published by theosanderson over 2 years ago

taxonium-component -

- TypeScript
Published by theosanderson over 2 years ago

taxonium-component -

- TypeScript
Published by theosanderson over 2 years ago

taxonium-component -

- TypeScript
Published by theosanderson over 2 years ago

taxonium-component - v2.0.93

What's Changed

  • Create a reusable React component for Taxonium (and change building system to vite) by @theosanderson in https://github.com/theosanderson/taxonium/pull/485

Full Changelog: https://github.com/theosanderson/taxonium/compare/v2.0.92...v2.0.93

- TypeScript
Published by theosanderson over 2 years ago

taxonium-component -

This is a release to capture the status before a big merge (https://github.com/theosanderson/taxonium/pull/485)

- TypeScript
Published by theosanderson over 2 years ago

taxonium-component - v2.0.91

What's Changed

  • Add preliminary Nexus support by @theosanderson in https://github.com/theosanderson/taxonium/pull/458
  • Formatting by @theosanderson in https://github.com/theosanderson/taxonium/pull/459
  • Fix lagging key for genotypes by @theosanderson in https://github.com/theosanderson/taxonium/pull/464
  • key heading by @theosanderson in https://github.com/theosanderson/taxonium/pull/465
  • remove newlines by @theosanderson in https://github.com/theosanderson/taxonium/pull/468
  • fix sort by @theosanderson in https://github.com/theosanderson/taxonium/pull/470
  • Fix issue with root seq by @theosanderson in https://github.com/theosanderson/taxonium/pull/471

Full Changelog: https://github.com/theosanderson/taxonium/compare/v2.0.90...v2.0.91

- TypeScript
Published by theosanderson about 3 years ago

taxonium-component - v2.0.90

Fixes issues with using >4 GB memory #456

- TypeScript
Published by theosanderson about 3 years ago

taxonium-component - v2.0.86

What's Changed

  • add default search by @theosanderson in https://github.com/theosanderson/taxonium/pull/454
  • captures is_tip

Full Changelog: https://github.com/theosanderson/taxonium/compare/v2.0.85...v2.0.86

- TypeScript
Published by theosanderson about 3 years ago

taxonium-component - v2.0.85

What's Changed

  • linkify Taxonium by @theosanderson in https://github.com/theosanderson/taxonium/pull/448
  • fix tsv csv by @theosanderson in https://github.com/theosanderson/taxonium/pull/449
  • Add reset zoom function by @theosanderson in https://github.com/theosanderson/taxonium/pull/450
  • add key by @theosanderson in https://github.com/theosanderson/taxonium/pull/451
  • Update Key.jsx by @theosanderson in https://github.com/theosanderson/taxonium/pull/453

Full Changelog: https://github.com/theosanderson/taxonium/compare/v2.0.84...v2.0.85

- TypeScript
Published by theosanderson about 3 years ago

taxonium-component -

Taxoniumtools now captures the date of creation.

- TypeScript
Published by theosanderson over 3 years ago

taxonium-component - v2.0.83

Release to ensure archiving at Zenodo

- TypeScript
Published by theosanderson over 3 years ago

taxonium-component - v2.0.82

What's Changed

  • Fix #443 for cases where first node has x dist of 0 by @theosanderson in https://github.com/theosanderson/taxonium/pull/444

Full Changelog: https://github.com/theosanderson/taxonium/compare/v2.0.81...v2.0.82

- TypeScript
Published by theosanderson over 3 years ago

taxonium-component -

- TypeScript
Published by theosanderson over 3 years ago

taxonium-component - v2.0.80

What's Changed

  • Avoid a situation where the open button appears before the server is … by @theosanderson in https://github.com/theosanderson/taxonium/pull/424

Full Changelog: https://github.com/theosanderson/taxonium/compare/v2.0.79...v2.0.80

- TypeScript
Published by theosanderson over 3 years ago

taxonium-component - v2.0.79

What's Changed

  • We better clean up child processes in Taxonium electron, avoiding a potential issue where child processes might continue running in the background.

- TypeScript
Published by theosanderson over 3 years ago

taxonium-component - v2.0.78

What's Changed

  • unique port per taxonium_electron process by @theosanderson in https://github.com/theosanderson/taxonium/pull/419

Full Changelog: https://github.com/theosanderson/taxonium/compare/v2.0.67...v2.0.78

- TypeScript
Published by theosanderson over 3 years ago

taxonium-component -

Fixes a major issue which could lead in practice to a 2 GB limit for Taxonium electron

- TypeScript
Published by theosanderson over 3 years ago

taxonium-component -

Beta release of Taxonium desktop app. Windows, Linux and Mac download below.

- TypeScript
Published by theosanderson over 3 years ago

taxonium-component - v2.0.64

- TypeScript
Published by theosanderson over 3 years ago

taxonium-component -

- TypeScript
Published by theosanderson over 3 years ago

taxonium-component - Taxonium Electron App

Mac binaries for now

- TypeScript
Published by theosanderson over 3 years ago

taxonium-component -

An attempt to build electron

- TypeScript
Published by theosanderson over 3 years ago

taxonium-component - v2.0.61

Improved newicktotaxonium

- TypeScript
Published by theosanderson over 3 years ago

taxonium-component - v2.0.60

What's Changed

  • Newick to Taxonium by @theosanderson in https://github.com/theosanderson/taxonium/pull/395

Full Changelog: https://github.com/theosanderson/taxonium/compare/v2.0.58...v2.0.60

- TypeScript
Published by theosanderson over 3 years ago

taxonium-component - v2.0.58

Updates to view_taxonium

- TypeScript
Published by theosanderson over 3 years ago

taxonium-component -

Adds preview for a new tool view_taxonium

- TypeScript
Published by theosanderson over 3 years ago

taxonium-component -

- TypeScript
Published by theosanderson over 3 years ago

taxonium-component - v2.0.55

What's Changed

  • only name internal by @theosanderson in https://github.com/theosanderson/taxonium/pull/325

Full Changelog: https://github.com/theosanderson/taxonium/compare/v2.0.54...v2.0.55

- TypeScript
Published by theosanderson over 3 years ago

taxonium-component - v2.0.54

What's Changed

Main change to taxoniumtools is to capture GenBank info in the JSONL to support the Treenome browser.

  • Separate Github button, etc. by @theosanderson in https://github.com/theosanderson/taxonium/pull/305
  • Pre-commit config fix by @theosanderson in https://github.com/theosanderson/taxonium/pull/307
  • Precommit changes by @theosanderson in https://github.com/theosanderson/taxonium/pull/308
  • Fix lint by @theosanderson in https://github.com/theosanderson/taxonium/pull/310
  • [pre-commit.ci] pre-commit autoupdate by @pre-commit-ci in https://github.com/theosanderson/taxonium/pull/313
  • JSON parsing for nextstrain import initial steps by @amkram in https://github.com/theosanderson/taxonium/pull/314
  • docs: add amkram as a contributor for code, design, ideas by @allcontributors in https://github.com/theosanderson/taxonium/pull/315
  • always sort node array for nextstrain import by @amkram in https://github.com/theosanderson/taxonium/pull/317
  • Nextstrain branch updates by @theosanderson in https://github.com/theosanderson/taxonium/pull/316
  • Nextstrain JSON: use distance and/or divergence data, and parse metadata from json file by @amkram in https://github.com/theosanderson/taxonium/pull/318
  • fix small bug in setting xtype by @amkram in https://github.com/theosanderson/taxonium/pull/320
  • Nextstrain updates from Theo on Wed by @theosanderson in https://github.com/theosanderson/taxonium/pull/319
  • Nextstrain export by @theosanderson in https://github.com/theosanderson/taxonium/pull/321
  • fix ladderize by @theosanderson in https://github.com/theosanderson/taxonium/pull/322
  • NextStrain import by @theosanderson in https://github.com/theosanderson/taxonium/pull/312
  • CovSpectrum link out by @theosanderson in https://github.com/theosanderson/taxonium/pull/311
  • Nextstrain export by @theosanderson in https://github.com/theosanderson/taxonium/pull/323
  • Update SearchPanel.jsx by @theosanderson in https://github.com/theosanderson/taxonium/pull/324
  • Capture sequence features from GenBank file by @theosanderson in https://github.com/theosanderson/taxonium/pull/306

New Contributors

  • @pre-commit-ci made their first contribution in https://github.com/theosanderson/taxonium/pull/313
  • @amkram made their first contribution in https://github.com/theosanderson/taxonium/pull/314

Full Changelog: https://github.com/theosanderson/taxonium/compare/v2.0.53...v2.0.54

- TypeScript
Published by theosanderson over 3 years ago

taxonium-component -

- TypeScript
Published by theosanderson over 3 years ago

taxonium-component -

Pins protobuf because new version is not compatible with proto here

- TypeScript
Published by theosanderson over 3 years ago

taxonium-component -

- TypeScript
Published by theosanderson over 3 years ago

taxonium-component - v2.0.50

- TypeScript
Published by theosanderson over 3 years ago

taxonium-component -

- TypeScript
Published by theosanderson over 3 years ago

taxonium-component -

- TypeScript
Published by theosanderson over 3 years ago

taxonium-component - v2.0.47

What's Changed

  • Fixes the fact that root sequence previously had to be reference.
  • The last release also changed how X scaling works -- all trees generated with previous releases will now be zoomed out in X initially. Apologies for this inconvenience which is needed to get the structure in good shape.

Full Changelog: https://github.com/theosanderson/taxonium/compare/v2.0.45...v2.0.47

- TypeScript
Published by theosanderson over 3 years ago

taxonium-component -

- TypeScript
Published by theosanderson almost 4 years ago

taxonium-component -

- TypeScript
Published by theosanderson almost 4 years ago

taxonium-component -

- TypeScript
Published by theosanderson almost 4 years ago

taxonium-component -

- TypeScript
Published by theosanderson almost 4 years ago

taxonium-component -

- TypeScript
Published by theosanderson almost 4 years ago

taxonium-component -

- TypeScript
Published by theosanderson almost 4 years ago

taxonium-component - v2.0.39

What's Changed

Taxoniumtools should now support genes on the negative strand

- TypeScript
Published by theosanderson almost 4 years ago

taxonium-component -

- TypeScript
Published by theosanderson almost 4 years ago

taxonium-component -

- TypeScript
Published by theosanderson almost 4 years ago

taxonium-component -

What's Changed

  • add sequence mode by @theosanderson in https://github.com/theosanderson/taxonium/pull/209
  • Initial controlling of clade labels by @theosanderson in https://github.com/theosanderson/taxonium/pull/210
  • use orjson to shave a few seconds off output by @theosanderson in https://github.com/theosanderson/taxonium/pull/211
  • Update SearchPanel.jsx by @theosanderson in https://github.com/theosanderson/taxonium/pull/212
  • Parameters by @theosanderson in https://github.com/theosanderson/taxonium/pull/214
  • Shear by @theosanderson in https://github.com/theosanderson/taxonium/pull/215 [experimental]

Full Changelog: https://github.com/theosanderson/taxonium/compare/v.2.0.33...v2.0.35

- TypeScript
Published by theosanderson almost 4 years ago

taxonium-component - v2.0.34

What's Changed

  • Format by @theosanderson in https://github.com/theosanderson/taxonium/pull/207
  • Don't delete objects by @theosanderson in https://github.com/theosanderson/taxonium/pull/208
  • Capture usher clade info by @theosanderson in https://github.com/theosanderson/taxonium/pull/205

Full Changelog: https://github.com/theosanderson/taxonium/compare/v.2.0.32...v2.0.34

- TypeScript
Published by theosanderson almost 4 years ago

taxonium-component - v.2.0.33

What's Changed

  • Don't delete objects by @theosanderson in https://github.com/theosanderson/taxonium/pull/208
  • Capture usher clade info by @theosanderson in https://github.com/theosanderson/taxonium/pull/205

Full Changelog: https://github.com/theosanderson/taxonium/compare/v.2.0.32...v.2.0.33

- TypeScript
Published by theosanderson almost 4 years ago

taxonium-component -

Removes dependence on genbank file

- TypeScript
Published by theosanderson almost 4 years ago

taxonium-component - v2.0.32

What's Changed

  • X for modal by @theosanderson in https://github.com/theosanderson/taxonium/pull/202
  • Update filtering.js by @theosanderson in https://github.com/theosanderson/taxonium/pull/203
  • Name all nodes by @theosanderson in https://github.com/theosanderson/taxonium/pull/206

Full Changelog: https://github.com/theosanderson/taxonium/compare/v2.0.31...v2.0.32

- TypeScript
Published by theosanderson almost 4 years ago

taxonium-component - v2.0.31

What's Changed

  • Add total tips to config by @theosanderson in https://github.com/theosanderson/taxonium/pull/201

- TypeScript
Published by theosanderson almost 4 years ago

taxonium-component -

- TypeScript
Published by theosanderson almost 4 years ago

taxonium-component - v2.0.29

What's Changed

  • Adds the ability to preserve timetree files for other analyses

- TypeScript
Published by theosanderson almost 4 years ago

taxonium-component - v2.0.28

Fixes the expansion of condensed nodes to not erroneously group them together

- TypeScript
Published by theosanderson almost 4 years ago

taxonium-component -

- TypeScript
Published by theosanderson almost 4 years ago

taxonium-component - v2.0.26

What's Changed

  • Names for fields in side bar by @theosanderson in https://github.com/theosanderson/taxonium/pull/167
  • Fix a bug where some nodes were missing because they overlapped their parent by @theosanderson in https://github.com/theosanderson/taxonium/pull/168
  • Center correctly by @theosanderson in https://github.com/theosanderson/taxonium/pull/170
  • Prettify more names by @theosanderson in https://github.com/theosanderson/taxonium/pull/169
  • Add permalinks to zoom in on searches by @theosanderson in https://github.com/theosanderson/taxonium/pull/171
  • Handle x precision by @theosanderson in https://github.com/theosanderson/taxonium/pull/172
  • Fix zoom to search by @theosanderson in https://github.com/theosanderson/taxonium/pull/174
  • Update devcontainer by @theosanderson in https://github.com/theosanderson/taxonium/pull/177
  • Load newick trees by @theosanderson in https://github.com/theosanderson/taxonium/pull/178
  • Input overhaul by @theosanderson in https://github.com/theosanderson/taxonium/pull/181
  • fix issues by @theosanderson in https://github.com/theosanderson/taxonium/pull/182
  • fix by @theosanderson in https://github.com/theosanderson/taxonium/pull/183
  • Fixes by @theosanderson in https://github.com/theosanderson/taxonium/pull/184
  • Settings by @theosanderson in https://github.com/theosanderson/taxonium/pull/185
  • Settings by @theosanderson in https://github.com/theosanderson/taxonium/pull/186
  • Node color for bare trees by @theosanderson in https://github.com/theosanderson/taxonium/pull/187
  • Fill in config from params by @theosanderson in https://github.com/theosanderson/taxonium/pull/189
  • Dramatic performance improvement by avoiding creating a combo data ob… by @theosanderson in https://github.com/theosanderson/taxonium/pull/191
  • update by @theosanderson in https://github.com/theosanderson/taxonium/pull/192

Full Changelog: https://github.com/theosanderson/taxonium/compare/v2.0.25...v2.0.26

- TypeScript
Published by theosanderson almost 4 years ago