dipper2 - Standalone wrapper & scripts, parallelised primer testing, installation script, version update & minor changes

• there is now a standalone pipeline for primer testing only with its own python and bash wrapper
• Scripts that had to be changed for the standalone pipeline accompany this release (with standalone in script name)
• DiPPER2_wrapper now also exists as python wrapper
• The primer testing module also exists now in a parallelised version with its own shell wrapper
• dependency_install.sh can be used to install dependencies.
• versions have been adjusted in all scripts
• number of required flags have been adjusted in each wrapper script
• additional documentation
• bug fix: primer testing script targets and neighbours output mixup
• additional logging/ debug messages for log file

- Python
Published by ThWacker about 1 year ago

dipper2 - Zenodo Release

Release of functional pipeline with unittest testing suite. The pipeline is currently run from a bash wrapper script. Containerisation in docker and/or conda will happen in the future.

- Python
Published by ThWacker over 1 year ago

dipper2 - Zenodo re-release v1.0.0-beta

Compare previous release.

- Python
Published by ThWacker over 1 year ago

dipper2 - Zenodo Release v1.0.0

Functional pipeline with testing suite. There will be further changes in results formatting, custom blast has not yet been established and containerisation in docker or conda has not taken place. This is a work in progress but functional (tested on Mac OS and Ubuntu) when run from a bash script.

- Python
Published by ThWacker over 1 year ago

dipper2 - Bash-wrapper run beta release

The pipeline is not full fledged, it still has low code coverage in testing and no Docker or Conda containerisation is present yet. The output format will change. No custom blast of targets yet present (blastx used in this version).

- Python
Published by ThWacker over 1 year ago