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mini_analysis

Code for analysis of spontaneous/mini currents in Igor.

https://github.com/jnjahncke/mini_analysis

Science Score: 44.0%

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Repository

Code for analysis of spontaneous/mini currents in Igor.

Basic Info
  • Host: GitHub
  • Owner: jnjahncke
  • License: mit
  • Language: IGOR Pro
  • Default Branch: main
  • Homepage:
  • Size: 14.6 KB
Statistics
  • Stars: 0
  • Watchers: 1
  • Forks: 0
  • Open Issues: 0
  • Releases: 1
Created over 2 years ago · Last pushed 9 months ago
Metadata Files
Readme License Citation

README.md

Mini Analysis Code

The minianalysis code can be used to analyze spontaneous events in voltage clamp recordings in Igor. This code requires "justfilters". To run minianalysis: mini_analysis(startwave, endwave, starttime, endtime, level, plotflag). This function assumes that your waves are named "sweepX" where X is the wave number.

  • startwave - First wave to analyze.
  • endwave - Last wave to analyze.
  • starttime - Time, in seconds, in each wave to start analyzing.
  • endtime - Time, in seconds, in each wave to stop analyzing.
  • level - Cuttoff for the slope (first derivative) to use for event detection.
  • plotflag - If 1, will display graphs of data.

Example:

mini_analysis(2,11,0.15,29, -8000, 1)

This will analyze all waves from sweep2 through sweep11. Each wave will only be analyzed from 0.15 seconds until 29 seconds. The detection cutoff for events is anything with a slope more negative than -8000. When the code is done running it will display analysis graphs.

Owner

  • Name: Jennifer Jahncke
  • Login: jnjahncke
  • Kind: user

Citation (CITATION.cff) 

cff-version: 1.0.0
message: "If you use this software, please cite it as below."
authors:
- family-names: "Jahncke"
  given-names: "Jennifer N"
  orcid: "https://orcid.org/0000-0003-2319-6109"
title: "Mini Analysis Code"
version: 1.0.0
doi: 10.5281/zenodo.15596385
date-released: 2025-06-04
url: "https://github.com/jnjahncke/mini_analysis"

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