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training-modules

A collection of modules that are combined into 1-5 day workshops on computational topics for the childhood cancer research community.

https://github.com/alexslemonade/training-modules

Science Score: 44.0%

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    CITATION.cff file
    Found CITATION.cff file
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    .zenodo.json file
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    Scientific vocabulary similarity
    Low similarity (8.3%) to scientific vocabulary
Last synced: 6 months ago · JSON representation ·

Repository

A collection of modules that are combined into 1-5 day workshops on computational topics for the childhood cancer research community.

Basic Info
  • Host: GitHub
  • Owner: AlexsLemonade
  • License: other
  • Language: HTML
  • Default Branch: master
  • Size: 622 MB
Statistics
  • Stars: 69
  • Watchers: 8
  • Forks: 31
  • Open Issues: 35
  • Releases: 0
Created over 7 years ago · Last pushed 8 months ago
Metadata Files
Readme Contributing Funding License Citation

README.md

Data Lab Training Modules

This repository is a collection of modules that are combined into 1-5 day workshops on computational topics for the childhood cancer research community.

If you are a childhood cancer researcher and are interested attending a workshop go to the Data Lab's website to learn more about our upcoming workshop locations and dates.

Here is a sample schedule for the RNA-seq workshop if you'd like to see the order in which this material is presented. The data files that we process in the course are too large to be stored on GitHub so you will not be able to follow the material exactly as written without attending a workshop.

Structure of each module:

structure

Background slides:

The accompanying slides for each module are linked below and briefly introduce the concepts underlying each module.

Cheatsheets:

Cheatsheets for each module are named and linked below. Each cheatsheet consists of functions that are used in its corresponding module, along with links to documentation on the usage of these functions.

These cheatsheets can also be found in the folder named module-cheatsheets.

Owner

  • Name: Alex's Lemonade Stand Foundation
  • Login: AlexsLemonade
  • Kind: organization

Childhood Cancer Data Lab of ALSF

Citation (CITATION.cff) 

cff-version: 1.1.0
authors:
  - family-names: Shapiro
    given-names: Joshua A.
    orcid: https://orcid.org/0000-0002-6224-0347
  - family-names: Spielman
    given-names: Stephanie J.
    orcid: https://orcid.org/0000-0002-9090-4788
  - family-names: Savonen
    given-names: Candace L.
    orcid: https://orcid.org/0000-0001-6331-7070
  - family-names: Hawkins
    given-names: Allegra G.
    orcid: https://orcid.org/0000-0001-6026-3660
  - family-names: Bethell
    given-names: Chante J.
    orcid: https://orcid.org/0000-0001-9653-8128
  - family-names: Venkatesh Prasad
    given-names: Deepashree
    orcid: https://orcid.org/0000-0001-5756-4083
  - family-names: Greene
    given-names: Casey S.
    orcid: https://orcid.org/0000-0001-8713-9213
  - family-names: Taroni
    given-names: Jaclyn N.
    orcid: https://orcid.org/0000-0003-4734-4508
title: "Childhood Cancer Data Lab Training Modules"
version: 2023-may
date-released: 2023-05-09

GitHub Events

Total
  • Create event: 36
  • Release event: 4
  • Issues event: 43
  • Watch event: 6
  • Delete event: 37
  • Issue comment event: 57
  • Push event: 115
  • Pull request review comment event: 43
  • Pull request review event: 65
  • Pull request event: 64
  • Fork event: 3
Last Year
  • Create event: 36
  • Release event: 4
  • Issues event: 43
  • Watch event: 6
  • Delete event: 37
  • Issue comment event: 57
  • Push event: 115
  • Pull request review comment event: 43
  • Pull request review event: 65
  • Pull request event: 64
  • Fork event: 3

Issues and Pull Requests

Last synced: 6 months ago

All Time
  • Total issues: 17
  • Total pull requests: 16
  • Average time to close issues: over 1 year
  • Average time to close pull requests: 21 days
  • Total issue authors: 2
  • Total pull request authors: 3
  • Average comments per issue: 0.71
  • Average comments per pull request: 0.56
  • Merged pull requests: 12
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 12
  • Pull requests: 15
  • Average time to close issues: 23 days
  • Average time to close pull requests: 1 day
  • Issue authors: 2
  • Pull request authors: 3
  • Average comments per issue: 0.5
  • Average comments per pull request: 0.0
  • Merged pull requests: 12
  • Bot issues: 0
  • Bot pull requests: 0
View more stats
Top Authors
Issue Authors
  • sjspielman (25)
  • jashapiro (19)
  • jaclyn-taroni (6)
  • alexslemonade-docs-bot (2)
Pull Request Authors
  • sjspielman (23)
  • jashapiro (17)
  • alexslemonade-docs-bot (13)
  • jaclyn-taroni (8)
Top Labels
Issue Labels
automated (2) automate all the things (1) Epic (1)
Pull Request Labels
automated (12)

Dependencies

.github/workflows/build-and-push-docker.yml actions
  • actions/checkout v3 composite
  • docker/build-push-action v3 composite
  • docker/login-action v2 composite
  • docker/setup-buildx-action v2 composite
  • ravsamhq/notify-slack-action v1.1 composite
.github/workflows/build-docker.yml actions
  • actions/checkout v3 composite
  • docker/build-push-action v3 composite
  • docker/setup-buildx-action v2 composite
.github/workflows/make-live.yml actions
  • actions/checkout v3 composite
  • aws-actions/configure-aws-credentials v1-node16 composite
  • peter-evans/create-pull-request v3 composite
.github/workflows/render-rmds.yml actions
  • actions/checkout v3 composite
  • aws-actions/configure-aws-credentials v1-node16 composite
.github/workflows/spell-check.yml actions
  • actions/checkout v3 composite
  • actions/upload-artifact v3 composite
Dockerfile docker
  • rocker/tidyverse 4.1.2 build