cbassed50 - v0.2.0

Version 0.2.0 - 2025-06-05

Major Changes

• Updated internal code and tests to work with the new required columns.
• Added zzz.R to handle .onLoad() behaviour.

File and Structure Updates

• Replaced outdated files in examples/outputs/.
• Updated example file structure to follow CRAN guidelines.
• Renamed demo .qmd files to tutorial.qmd.

Documentation

• Updated README.md with clearer examples and explanations.
• Re-rendered documentation using roxygen2.
• Fixed LaTeX rendering issues in help files (e.g., \eqn{} instead of Unicode symbols).

Build and Compatibility

• Updated DESCRIPTION file for CRAN compliance.
• Removed obsolete and unused files.

Example Data

• Updated existing example data.
• Added new example datasets for tutorials.

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Full Changelog: https://github.com/reefgenomics/CBASSED50/compare/0.1.5.1...v0.2.0

- R
Published by ColinL1 11 months ago

cbassed50 - v0.1.5.1

Changes

1. Added terminal breakpoint temperature (ED5) and thermal limit temperature (ED95) to functions
2. Minor documentation updates
3. Fix release issue

Get Started

Demo File

To get started download CBASSED50_demo.qmd. GitHub allows you to do this directly from the web interface:

This is a document with a notebook interface that contains explanatory text together with the code. Open the document in RStudio and explore it.

RStudio will offer to install missing packages required for running the CBASSED50_demo.qmd, please do this:

Install CBASSED50

You can install the latest version of CBASSED50 from GitHub:

``` r if(!require(devtools)){ install.packages("devtools") }

devtools::install_github("reefgenomics/CBASSED50@0.1.5", force=TRUE)

- R
Published by ColinL1 over 1 year ago

cbassed50 - v0.1.4

• Minor documentation updates
• Change dimension of y axis in demo_temprespcurve.pdf

- R
Published by greenjune-ship-it over 2 years ago

cbassed50 - v0.1.3

What's New?

• Added Timepoint to the list of mandatory columns.
• Included curveid=GroupingProperty parameter for fit_drms() function to use Genotype for grouping the data.
• Boxplot are plotted with ED50 values that come from models built with is_curveid = TRUE.
• Exploratory curves are plotted based on ED50 values that come from models based on individual colonies (without curveid).
• Final curves are plotted based on PAM predictions that come from models built with is_curveid = FALSE
• Added confidence intervals for the ED50 summary table: Conf_Int.
• Visualized confidence intervals for predictions on the temperature response curve with geom_ribbon().

- R
Published by greenjune-ship-it over 2 years ago

cbassed50 - v0.1.1

- R
Published by greenjune-ship-it over 2 years ago

cbassed50 - v0.1.0

- R
Published by greenjune-ship-it over 2 years ago