pooe_lite - v1.0

Kaggle-ready implementation of POOE, simplified Nextflow integration, support for motif discovery using MEME, JASPAR, ELM, FIMO, etc.

Acknowledgements:

This repository is part of the PhD research conducted by Sakshi Bharti at the Senckenberg Biodiversity and Climate Research Center, affiliated with Goethe University, Frankfurt. The work was carried out under the supervision of Prof. Dr. Marco Thines, with the aim of developing reproducible and scalable pipelines for effector prediction and promoter motif analysis in oomycetes.

Special thanks to: - The developers of the original POOE tool, which this notebook builds upon.

- Jupyter Notebook
Published by sakshianil 11 months ago