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survivalmodels.jl

Non-parametric, semi-parametric, and parametric models for standard survival analysis.

https://github.com/juliasurv/survivalmodels.jl

Science Score: 44.0%

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Scientific Fields

Earth and Environmental Sciences Physical Sciences - 40% confidence
Engineering Computer Science - 40% confidence
Last synced: 4 months ago · JSON representation ·

Repository

Non-parametric, semi-parametric, and parametric models for standard survival analysis.

Basic Info
Statistics
  • Stars: 8
  • Watchers: 2
  • Forks: 0
  • Open Issues: 4
  • Releases: 2
Created over 1 year ago · Last pushed 4 months ago
Metadata Files
Readme License Citation

README.md

SurvivalModels.jl

A pure-julia take on standard survival analysis modeling.

Stable Dev Build Status Coverage Code Style: Blue ColPrac: Contributor's Guide on Collaborative Practices for Community Packages PkgEval Aqua

The SurivalModels.jl package is part of the JuliaSurv survival analysis suite. It provides the necessary tools to perform modeling of survival data, from non-parametric estimators and tests to semi-parametric and fully-parametric models.

Getting started

The package available on Julai's General registry, therefore you can use the following to install it :

julia ] add SurvivalModels

Features / Roadmap

The package targets for the moment the following features:

  • Nonparametric
    • [x] Kaplan-Meier
    • [x] Log-rank test (including stratification)
  • Semi-parametric
    • [x] Cox (See PR #15)
    • [ ] Aalen
  • Parametric
    • [x] General Hazard models
    • [ ] Frailties ?
    • [ ] Mixed models ?
    • [ ] More generic predictors such as splines ?
  • [ ] Junction with NetSurvival.jl to provide the same models on net survival instead of survival ? (i.e. with a population mortality offset.)
  • [ ]
  • [ ] Something else on this list ? Open a PR :)

In term of interface, we leverage the standard modeling interface from StatsBase.jl/StatsAPI.jl/StatsModels.jl.

Some of the models might not provide all the outputs you need for the moment. Feel free to open an issue to tell us, we'll look at it and add the features if we can :)

Contributions are welcome

If you want to contribute to the package, ask a question, found a bug or simply want to chat, do not hesitate to open an issue on this repo. General guidelines on collaborative practices (colprac) are available at https://github.com/SciML/ColPrac.

Owner

  • Name: JuliaSurv
  • Login: JuliaSurv
  • Kind: organization

Citation (CITATION.bib) 

@misc{SurvivalModels.jl,
	author  = {Oskar Laverny <oskar.laverny@univ-amu.fr> and contributors},
	title   = {SurvivalModels.jl},
	url     = {https://github.com/JuliaSurv/SurvivalModels.jl},
	version = {v1.0.0-DEV},
	year    = {2024},
	month   = {6}
}

GitHub Events

Total
  • Create event: 10
  • Commit comment event: 2
  • Release event: 1
  • Issues event: 12
  • Watch event: 1
  • Delete event: 8
  • Issue comment event: 19
  • Push event: 53
  • Pull request review comment event: 1
  • Pull request review event: 8
  • Pull request event: 14
Last Year
  • Create event: 10
  • Commit comment event: 2
  • Release event: 1
  • Issues event: 12
  • Watch event: 1
  • Delete event: 8
  • Issue comment event: 19
  • Push event: 53
  • Pull request review comment event: 1
  • Pull request review event: 8
  • Pull request event: 14

Issues and Pull Requests

Last synced: 4 months ago

All Time
  • Total issues: 5
  • Total pull requests: 1
  • Average time to close issues: 8 months
  • Average time to close pull requests: 4 days
  • Total issue authors: 2
  • Total pull request authors: 1
  • Average comments per issue: 0.0
  • Average comments per pull request: 1.0
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 0
Past Year
  • Issues: 2
  • Pull requests: 1
  • Average time to close issues: 8 days
  • Average time to close pull requests: 4 days
  • Issue authors: 1
  • Pull request authors: 1
  • Average comments per issue: 0.0
  • Average comments per pull request: 1.0
  • Merged pull requests: 1
  • Bot issues: 0
  • Bot pull requests: 0
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Top Authors
Issue Authors
  • lrnv (8)
  • sofia-maitri (3)
  • rimhajal (1)
Pull Request Authors
  • lrnv (7)
  • sofia-maitri (3)
  • dependabot[bot] (3)
  • FJRubio67 (1)
Top Labels
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dependencies (3)

Packages

  • Total packages: 1
  • Total downloads:
    • julia 3 total
  • Total dependent packages: 0
  • Total dependent repositories: 0
  • Total versions: 2
juliahub.com: SurvivalModels

Non-parametric, semi-parametric, and parametric models for standard survival analysis.

  • Versions: 2
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 3 Total
Rankings
Dependent repos count: 8.2%
Average: 21.9%
Dependent packages count: 35.5%
Last synced: 4 months ago

Dependencies

.github/workflows/CI.yml actions
  • actions/checkout v4 composite
  • codecov/codecov-action v4 composite
  • julia-actions/cache v2 composite
  • julia-actions/julia-buildpkg v1 composite
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  • julia-actions/julia-processcoverage v1 composite
  • julia-actions/julia-runtest v1 composite
  • julia-actions/setup-julia v2 composite
.github/workflows/CompatHelper.yml actions
.github/workflows/TagBot.yml actions
  • JuliaRegistries/TagBot v1 composite