cactus - Cactus v1.0.0 - Aztekium

What's Changed

• Updating PA distance filters and fixing a bug in the previous release by @jsalignon in https://github.com/jsalignon/cactus/pull/22.
• Small edits on the CHANGELOG (changing PR number) by @jsalignon in https://github.com/jsalignon/cactus/pull/23.
• Small edits on the CHANGELOG (changing PR number) by @jsalignon in https://github.com/jsalignon/cactus/pull/24.

Full Changelog: https://github.com/jsalignon/cactus/compare/v0.9.0...v1.0.0

- Nextflow
Published by jsalignon about 2 years ago

cactus - Cactus v0.9.0 - Gymnocalycium

What's Changed

• Adding quickstart scripts by @jsalignon in https://github.com/jsalignon/cactus/pull/19
• Revisions (new supplementary figures, tutorial, and options for peak annotation; fixing a bug for bigWig files) by @jsalignon in https://github.com/jsalignon/cactus/pull/20

Full Changelog: https://github.com/jsalignon/cactus/compare/v0.8.6...v0.9.0

- Nextflow
Published by jsalignon about 2 years ago

cactus - Cactus v0.8.6 - Pygmaeocereus Latest

What's Changed

• Adding scripts to analyze the case study by @jsalignon in https://github.com/jsalignon/cactus/pull/18

Full Changelog: https://github.com/jsalignon/cactus/compare/v0.8.5...v0.8.6

- Nextflow
Published by jsalignon over 2 years ago

cactus - Cactus v0.8.5 - Harrisia

What's Changed

• Updated scripts and containers/virtual environments for compatibility to newest versions of the dependencies
• Restored the use of conda and Mamba
• Updated and improved the documentation by @jsalignon in https://github.com/jsalignon/cactus/pull/16

Full Changelog: https://github.com/jsalignon/cactus/compare/v0.8.4...v0.8.5

- Nextflow
Published by jsalignon over 2 years ago

cactus - Cactus v0.8.4 - Matucana

What's Changed

• Updated Cactus for compatibility to newest versions of the dependencies
• Deprecated the use of conda and Mamba temporarily until a bug in conda is resolved
• Improved the documentation by @jsalignon in https://github.com/jsalignon/cactus/pull/15

Full Changelog: https://github.com/jsalignon/cactus/compare/v0.8.3...v0.8.4

- Nextflow
Published by jsalignon about 3 years ago

cactus - Cactus v0.8.3 - Espostoopsis

What's Changed

• fixing a bug to cancel the creationg of heatmaps with single entries… by @jsalignon in https://github.com/jsalignon/cactus/pull/11
• Release by @jsalignon in https://github.com/jsalignon/cactus/pull/12

Full Changelog: https://github.com/jsalignon/cactus/compare/v0.8.2...v0.8.3

- Nextflow
Published by jsalignon about 3 years ago

cactus - Cactus v0.8.2 - Mammilloydia

Cactus v0.8.2 - Mammilloydia

What's Changed

• Changed the docs by @jsalignon in https://github.com/jsalignon/cactus/pull/5
• Added options to keep unique DA and NDA genes or not in the splitting process by @jsalignon in https://github.com/jsalignon/cactus/pull/6
• Fixed a bug in the script to download test datasets and references by @jsalignon in https://github.com/jsalignon/cactus/pull/8
• Release by @jsalignon in https://github.com/jsalignon/cactus/pull/7 @jsalignon in https://github.com/jsalignon/cactus/pull/9

Full Changelog: https://github.com/jsalignon/cactus/compare/v0.8.1...v0.8.2

- Nextflow
Published by jsalignon about 3 years ago

cactus - Cactus v0.8.1 - Cephalocereus

• updating the figures and the docs: 1, 2, 3, 4, 5, 6, 7, 8, 9

• fixing bugs in the heatmap process

• making clearer labels for the heatmap

• fixing a bug with the plotFDRbyPAfilters function

• adding a functionality to manually set the size of the numbers indicating the overlap in the cells for the heatmap figures

- Nextflow
Published by jsalignon about 3 years ago

cactus - Cactus v0.8 - Lophophora

First release.

Full Changelog: https://github.com/jsalignon/cactus/commits/v0.8

- Nextflow
Published by jsalignon over 3 years ago