Science Score: 28.0%
This score indicates how likely this project is to be science-related based on various indicators:
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✓CITATION.cff file
Found CITATION.cff file -
○codemeta.json file
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○.zenodo.json file
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○DOI references
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✓Academic publication links
Links to: arxiv.org -
○Academic email domains
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○Scientific vocabulary similarity
Low similarity (11.0%) to scientific vocabulary
Keywords
Repository
MATLAB library for N-D patch work
Basic Info
- Host: GitHub
- Owner: adalca
- Language: MATLAB
- Default Branch: master
- Size: 1.82 MB
Statistics
- Stars: 3
- Watchers: 6
- Forks: 2
- Open Issues: 0
- Releases: 0
Topics
Metadata Files
readme.md
patchlib
A library for working with N-D patches, also including several 2D and 3D examples to illustrate the library applicability.
- See
functionsfor a (non-exhaustive) list of functions. - See
examplesfor a list of examples to get you started. - See papers section below for a list of academic papers in which we used this library
Installation
Set up code
Do a git pull or download patchlib as a zip. Unzip the files, and add the folder to your MATLAB path:
>> addpath(genpath('PATH_TO_PATCHLIB'));
Then run setup script:
>> verifypatchlib.m;
Dependencies
Add each of the following toolboxes to your MATLAB path:
The following toolbox is required by all of the code: - matlib
The MRF-related methods (e.g. for spatial regularization): - UGM library by Mark Schmidt
Papers
If you find this library useful, please cite one of the following papers for which the library was initially built (download bib):
Medical Image Imputation from Image Collections
A.V. Dalca, K.L. Bouman, W.T. Freeman, M.R. Sabuncu, N.S. Rost, P. Golland
IEEE TMI: Transactions on Medical Imaging 38.2 (2019): 504-514. eprint arXiv:1808.05732Population Based Image Imputation
A.V. Dalca, K.L. Bouman, W.T. Freeman, M.R. Sabuncu, N.S. Rost, P. Golland
In Proc. IPMI: International Conference on Information Processing and Medical Imaging. LNCS 10265, pp 1-13. 2017.Patch-Based Discrete Registration of Clinical Brain Images
A.V. Dalca, A. Bobu, N.S. Rost, P. Golland
In Proc. MICCAI-PATCHMI Patch-based Techniques in Medical Imaging, LNCS 9993, pp 60-67, 2016.
Contributors
Adrian Dalca (web | email)
Katie Bouman (web | email)
Contact Please let us know of any questions/suggestions by opening an issue or emailing us at {adalca,klbouman}@csail.mit.edu
Owner
- Name: Adrian Dalca
- Login: adalca
- Kind: user
- Location: Cambridge, MA
- Company: MIT
- Website: http://adalca.mit.edu
- Repositories: 24
- Profile: https://github.com/adalca
Professor at Harvard Medical School, Researcher at MIT. Machine Learning in Medical Image Analysis, computer vision.
Citation (citations.bib)
@article{dalca2019medical,
title={Medical Image Imputation From Image Collections},
author={Dalca, Adrian V and Bouman, Katherine L and Freeman, William T and Rost, Natalia S and Sabuncu, Mert R and Golland, Polina},
journal={IEEE transactions on medical imaging},
volume={38},
number={2},
pages={504--514},
year={2019},
publisher={IEEE}
}
@inproceedings{dalca2017population,
title={Population Based Image Imputation},
author={Dalca, Adrian V and Bouman, Katherine L and Freeman, William T and Rost, Natalia S and Sabuncu, Mert R and Golland, Polina},
booktitle={Information Processing in Medical Imaging},
year={2017},
pages={1--13},
organization={Springer}
}
@inproceedings{dalca2016patch,
title={Patch-Based Discrete Registration of Clinical Brain Images},
author={Dalca, Adrian V and Bobu, Andreea and Rost, Natalia S and Golland, Polina},
booktitle={International Workshop on Patch-based Techniques in Medical Imaging},
pages={60--67},
year={2016},
organization={Springer}
}
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