galaxy_interactive_testing

https://github.com/chrisbarnettster/galaxy_interactive_testing

Science Score: 18.0%

This score indicates how likely this project is to be science-related based on various indicators:

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CITATION.cff file
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codemeta.json file
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.zenodo.json file
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DOI references
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Scientific vocabulary similarity
Low similarity (11.4%) to scientific vocabulary

Last synced: 10 months ago · JSON representation ·

Repository

Basic Info

Host: GitHub
Owner: chrisbarnettster
License: other
Language: Python
Default Branch: cb_playtest
Size: 462 MB

Statistics

Stars: 0
Watchers: 0
Forks: 0
Open Issues: 5
Releases: 0

Created almost 7 years ago · Last pushed over 4 years ago

Metadata Files

Readme Contributing License Code of conduct Citation Security

README.rst

.. figure:: https://galaxyproject.org/images/galaxy-logos/galaxy_project_logo.jpg
   :alt: Galaxy Logo

The latest information about Galaxy can be found on the `Galaxy Community Hub `__.

Community support is available at `Galaxy Help `__.

.. image:: https://img.shields.io/badge/chat-irc.freenode.net%23galaxyproject-blue.svg
    :target: https://webchat.freenode.net/?channels=galaxyproject
    :alt: Chat on irc

.. image:: https://img.shields.io/badge/chat-gitter-blue.svg
    :target: https://gitter.im/galaxyproject/Lobby
    :alt: Chat on gitter

.. image:: https://img.shields.io/badge/release-documentation-blue.svg
    :target: https://docs.galaxyproject.org/en/master/
    :alt: Release Documentation

.. image:: https://travis-ci.org/galaxyproject/galaxy.svg?branch=dev
    :target: https://travis-ci.org/galaxyproject/galaxy
    :alt: Inspect the test results

Galaxy Quickstart
=================

Galaxy requires Python 2.7 To check your python version, run:

.. code:: console

    $ python -V
    Python 2.7.3

Start Galaxy:

.. code:: console

    $ sh run.sh

Once Galaxy completes startup, you should be able to view Galaxy in your
browser at:

http://localhost:8080

Configuration & Tools
=====================

You may wish to make changes from the default configuration. This can be
done in the ``config/galaxy.ini`` file.

Tools can be either installed from the Tool Shed or added manually.
 For details please see the `tutorial `__.
Note that not all dependencies for the tools provided in the
``tool_conf.xml.sample`` are included. To install them please visit
"Manage dependencies" in the admin interface.

Issues and Galaxy Development
=============================

Please see `CONTRIBUTING.md `_ .

Roadmap
=============================

Interested in the next steps for Galaxy? Take a look at the `roadmap `__.

Owner

Login: chrisbarnettster
Kind: user

Repositories: 56
Profile: https://github.com/chrisbarnettster

Citation (CITATION)

If you use or extend Galaxy in your published work, please cite this
publication:

- Afgan E, Baker D, Batut B, van den Beek M, Bouvier D, Čech M, Chilton J,
  Clements D, Coraor N, Grüning BA, Guerler A, Hillman-Jackson J, Hiltemann S,
  Jalili V, Rasche H, Soranzo N, Goecks J, Taylor J, Nekrutenko A, Blankenberg
  D. "The Galaxy platform for accessible, reproducible and collaborative
  biomedical analyses: 2018 update"
  Nucleic Acids Res. (2018) 46(W1):W537-W544 doi:10.1093/nar/gky379

BibTeX format:

@article{10.1093/nar/gky379,
  title = {The {Galaxy} platform for accessible, reproducible and collaborative biomedical analyses: 2018 update},
  author = {Afgan, Enis and Baker, Dannon and Batut, B\'{e}r\'{e}nice and van den Beek, Marius and Bouvier, Dave and \v{C}ech, Martin and Chilton, John and Clements, Dave and Coraor, Nate and Gr\"uning, Bj\"orn A. and Guerler, Aysam and Hillman-Jackson, Jennifer and Hiltemann, Saskia and Jalili, Vahid and Rasche, Helena and Soranzo, Nicola and Goecks, Jeremy and Taylor, James and Nekrutenko, Anton and Blankenberg, Daniel},
  journal = {Nucleic Acids Res.},
  doi = {10.1093/nar/gky379},
  volume = {46},
  number = {W1},
  pages = {W537-W544},
  year = {2018},
  url = {https://doi.org/10.1093/nar/gky379},
  publisher = {Oxford University Press}
}


More publications
-----------------

To cite specific Galaxy components/features or other Galaxy project
publications, see

https://galaxyproject.org/citing-galaxy

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