WorldOceanAtlasTools.jl-04f20302-f1b9-11e8-29d9-7d841cb0a64a

Last mirrored from https://github.com/briochemc/WorldOceanAtlasTools.jl.git on 2019-11-19T07:47:30.118-05:00 by @UnofficialJuliaMirrorBot via Travis job 481.41 , triggered by Travis cron job on branch "master"

https://gitlab.com/UnofficialJuliaMirror/WorldOceanAtlasTools.jl-04f20302-f1b9-11e8-29d9-7d841cb0a64a

Science Score: 41.0%

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CITATION.cff file
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Links to: arxiv.org, zenodo.org
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Host: gitlab.com
Owner: UnofficialJuliaMirror
License: mit
Default Branch: master

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Created about 7 years ago

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Readme License Citation

ReadMe.md

World Ocean Atlas Tools

WorldOceanAtlasTools.jl was developed for the purpose of downloading and using data from the World Ocean Atlas (WOA) database to be used by the AIBECS.jl package. The more generic ambition is for WorldOceanAtlasTools.jl to provide an API that can fetch data from this list of WOA data sets and products (located on the National Oceanic and Atmospheric Administration (NOAA) wesbite) and fit it to any model's grid.

This is a work in progress, therefore PRs, suggestions, and generally help are, of course, more than welcome!

WorldOceanAtlasTools.jl essentially defines the nomenclature and URLs used by the WOA and then relies on the DataDeps.jl package developed by White et al. (2018) to download the corresponding NetCDF files. (NetCDF files are read using the NCDatasets.jl package.)

In order to facilitate the use of WOA data in AIBECS.jl, the WorldOceanAtlasTools.jl package can use a grid from the OceanGrids.jl package and bin a WOA tracer into that grid, and uses the NearestNeighbors.jl package to decide where to bin each observation.

If you use this package, please cite it using the CITATION.bib file, and cite the WOA references using the citation function or use the corresponding bibtex entries in the CITATION.bib file.

Citation (CITATION.bib)

@misc{WorldOceanAtlasTools.jl-2019,
  author       = {Beno\^{i}t Pasquier},
  title        = {WorldOceanAtlasTools.jl: Download and process World Ocean Data in Julia},
  month        = may,
  year         = 2019,
  doi          = {10.5281/zenodo.2677666}
}

# For using DataDeps

@article{DataDeps.jl-2018,
  author    = {Lyndon White and
               Roberto Togneri and
               Wei Liu and
               Mohammed Bennamoun},
  title     = {DataDeps.jl: Repeatable Data Setup for Replicable Data Science},
  journal   = {CoRR},
  volume    = {abs/1808.01091},
  year      = {2018},
  url       = {http://arxiv.org/abs/1808.01091},
  archivePrefix = {arXiv},
  eprint    = {1808.01091},
  timestamp = {Sun, 02 Sep 2018 15:01:57 +0200},
  biburl    = {https://dblp.org/rec/bib/journals/corr/abs-1808-01091},
  bibsource = {dblp computer science bibliography, https://dblp.org}
}

# For World Ocean Atlas Data (NOT EXHAUSTIVE!)
# TODO Complete the references list below

@article{Garcia_06a,
TITLE = "{World Ocean Atlas 2005, Volume 3: Dissolved Oxygen, Apparent Oxygen Utilization, and Oxygen Saturation. S. Levitus Ed.}",
AUTHOR = "H. E. Garcia and R. A. Locarnini and  T. P. /Sigmaner and J. I. Antonov",
JOURNAL = "NOAA Atlas NESDIS 63, U.S. Government Printing Office, Washington, D.C.",
PAGES = "342pp",
YEAR = "2006"
}

@article{Garcia_06b,
TITLE ="{World Ocean Atlas 2005, Volume 4: Nutrients (phosphate, nitrate, silicate). S. Levitus Ed.}",
AUTHOR = "H. E. Garcia and  R. A. Locarnini and  T. P. Boyer and J. I. Antonov",
JOURNAL = "NOAA Atlas NESDIS 64, U.S. Government Printing Office, Washington, D.C.",
PAGES = "396pp",
YEAR = "2006"
}


@article{Garcia_etal_2010b,
TITLE ="{World Ocean Atlas 2009, Volume 4: Nutrients (phosphate, nitrate, silicate). S. Levitus Ed.}",
AUTHOR = "H. E. Garcia and  R. A. Locarnini and  T. P. Boyer and J. I. Antonov",
JOURNAL = "U.S. Government Printing Office, Washington, D.C.",
PAGES = "398pp",
YEAR = "2010"
}

@article{WOA_2013_temp,
  author = {R. A. Locarnini and A. V. Mishonov and J. I. Antonov and T. P. Boyer and H. E. Garcia and O. K. Baranova and M. M. Zweng and C. R. Paver and J. R. Reagan and D. R. Johnson and M. Hamilton and D. Seidov},
  title={World Ocean Atlas 2013},
  volume ={Volume 1: Temperature},
  year = {2013},
  note = {{S}. Levitus, Ed., A. Mishonov Technical Ed.; NOAA Atlas NESDIS 73}
}

@article{WOA_2013_nut,
  author = {H. E. Garcia and R. A. Locarnini and T. P. Boyer and J. I. Antonov and O. K. Baranova and M. M. Zweng and J. R. Reagan and D. R. Johnson},
  title={{World Ocean Atlas 2013}},
  volume ={{Volume 4}: Dissolved Inorganic Nutrients (phosphate, nitrate, silicate)},
  year = {2014},
  note = {{S}. Levitus, Ed., A. Mishonov Technical Ed.},
  JOURNAL = "NOAA Atlas NESDIS 76, U.S. Government Printing Office, Washington, D.C.",
}

@article{WOA_2018_nut,
  author = {H. E. Garcia and K. Weathers and C. R. Paver and I. Smolyar and T. P. Boyer and R. A. Locarnini and M. M. Zweng and A. V. Mishonov and O. K. Baranova and D. Seidov and J. R. Reagan},
  title={{World Ocean Atlas 2018}},
  volume ={{Volume 4}: Dissolved Inorganic Nutrients (phosphate, nitrate and nitrate+nitrite, silicate)},
  year = {in preparation},
  note = {A. Mishonov Technical Ed.}
}

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