zf-rbm
Code to accompany Van der Plas*, Tubiana* et al., 2023, eLife
Science Score: 23.0%
This score indicates how likely this project is to be science-related based on various indicators:
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○CITATION.cff file
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○codemeta.json file
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○.zenodo.json file
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✓DOI references
Found 1 DOI reference(s) in README -
✓Academic publication links
Links to: biorxiv.org -
○Academic email domains
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○Institutional organization owner
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○JOSS paper metadata
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○Scientific vocabulary similarity
Low similarity (4.8%) to scientific vocabulary
Last synced: 10 months ago
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JSON representation
Repository
Code to accompany Van der Plas*, Tubiana* et al., 2023, eLife
Basic Info
- Host: GitHub
- Owner: vdplasthijs
- License: mit
- Language: Jupyter Notebook
- Default Branch: master
- Homepage: https://elifesciences.org/articles/83139
- Size: 439 MB
Statistics
- Stars: 1
- Watchers: 2
- Forks: 0
- Open Issues: 0
- Releases: 0
Created over 6 years ago
· Last pushed over 3 years ago
Metadata Files
Readme
License
Citation
README.md
Code for Van der Plas, Tubiana and colleagues, 2023 eLife
Source:
https://elifesciences.org/articles/83139
and former bioRxiv preprint:
https://www.biorxiv.org/content/10.1101/2021.11.09.467900v1
We welcome you to reuse this code, and ask you to please cite our eLife article if you do.
Instructions:
- All figures were generated in whole by notebooks in
/zf-rbm/figure_notebooks/. All other folders are just data for the notebooks and modulesfigure_notebooks/or archived code. - The package versions are documented in
/zf-rbm/zf-rbm-py37.yml. - Some computing-intensive code is in another repo,
vdplasthijs/dnp-code/-- in particular calculation of model stats vs experimental stats of Fig 2, and some cRBM-related stuff. - The cRBM code is extensively documented including tutorials in the repo
https://github.com/jertubiana/PGM, and described in detail in our elife paper. - Data is available at
https://gin.g-node.org/vdplasthijs/cRBM_zebrafish_spontaneous_data
Owner
- Name: Thijs van der Plas
- Login: vdplasthijs
- Kind: user
- Location: Oxford, UK
- Company: The Alan Turing Institute
- Website: https://www.turing.ac.uk/people/research-associates/dr-thijs-van-der-plas
- Twitter: vdplasthijs
- Repositories: 22
- Profile: https://github.com/vdplasthijs
Post doctoral researcher @ The Alan Turing Institute