icomo - v1.0.3

What's changed

• Allows installation with Python 3.13, and also run the tests with the newest python version
• Add to the Getting Started notebook in the documentation a workaround against the speed regression of JAX visible for small ODEs

- Python
Published by jdehning over 1 year ago

icomo - v1.0.2

Fixes

Fix an issue in delayedcopykernel

- Python
Published by jdehning over 1 year ago

icomo - v1.0.0

What's changed

Functionality

• icomo.jax2pytensor now correctly wraps also generated functions from the transformed functions. Thus, we can directly transform the interpolation and differential equation solver of Diffrax.

• CompModel now not only accepts dictionaries as structure of the compartments, but general nested dicts, tuples and lists.

Depreciations

• icomo.ODEIntegrator doesn't exist anymore, use directly diffrax.diffeqsolve, or icomo.diffeqsolve which defines some default values.
• The functions that directly helps building of pymc models moved to icomo.experimental

- Python
Published by jdehning over 1 year ago

icomo - v0.2.0

What's changed

Functionality

Now, the Pytensor operator returned by ODEIntegrator.get_op accepts any pytree as input and output, before only the input was allowed to be a pytree. So, specifying list_keys_to_return isn't required anymore when a dictionary is returned. Furthermore, specifying the return_shapes when creating the operator is also no longer necessary, the shape is inferred automatically.

- Python
Published by jdehning almost 2 years ago

icomo - v0.1.7

Add the possibility to change the distribution from which the magnitudes of changepoints are drawn, for example, to use a StudentT distribution instead of a Normal distribution.

- Python
Published by jdehning over 2 years ago

icomo - v0.1.6

What's Changed

Bugfixes

• Correct error in delayed_copy, the copy didn't decrease when the original compartment decreased

Full Changelog: https://github.com/Priesemann-Group/icomo/compare/0.1.3...0.1.4

- Python
Published by jdehning almost 3 years ago

icomo - v0.1.5

Correct error that importlib_metadata is imported twice

- Python
Published by jdehning almost 3 years ago

icomo - v0.1.4

What's Changed

Documentation

• Example notebook also contains now the python output which was missing by error

Full Changelog: https://github.com/Priesemann-Group/icomo/compare/0.1.3...0.1.4

- Python
Published by jdehning almost 3 years ago

icomo - Nicer documentation

What's Changed

Functionality

• ODEIntegrator now checks better whether parameters are correct

Bugfixes

• Pymc model in the example of the documentation contained some errors

Documentation

• Nicer layout (download buttons, header cleaner,...)

Full Changelog: https://github.com/Priesemann-Group/icomo/compare/0.1.2...0.1.3

- Python
Published by jdehning almost 3 years ago

icomo - Change of name

Change of name because of unavailability on PyPI

- Python
Published by jdehning almost 3 years ago

icomo - First release

First release, enjoy discovering this package!

- Python
Published by jdehning almost 3 years ago