multiverseg
MultiverSeg: Scalable Interactive Segmentation of Biomedical Imaging Datasets with In-Context Guidance
Science Score: 54.0%
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✓Academic publication links
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○Scientific vocabulary similarity
Low similarity (10.7%) to scientific vocabulary
Keywords
Repository
MultiverSeg: Scalable Interactive Segmentation of Biomedical Imaging Datasets with In-Context Guidance
Basic Info
- Host: GitHub
- Owner: halleewong
- License: apache-2.0
- Language: Jupyter Notebook
- Default Branch: main
- Homepage: http://multiverseg.csail.mit.edu/
- Size: 1.82 MB
Statistics
- Stars: 16
- Watchers: 3
- Forks: 5
- Open Issues: 1
- Releases: 0
Topics
Metadata Files
README.md
MultiverSeg
Project Page | Paper
Official implementation of MultiverSeg: Scalable Interactive Segmentation of Biomedical Imaging Datasets with In-Context Guidance accepted at ICCV 2025
Hallee E. Wong, Jose Javier Gonzalez Ortiz, John Guttag, Adrian V. Dalca
Updates
- (2025-07-01) Checkout the 3DSlicer extension: https://github.com/dalcalab/SlicerMultiverSeg
- (2025-06-25) MultiverSeg was accepted to ICCV 2025!
- (2025-01-26) inference code and weights released
- (2024-12-19) preprint released!
Models
We provide pre-trained weights here.
Installation
You can install multiverseg in two ways:
- With pip:
pip install git+https://github.com/halleewong/MultiverSeg.git
- Manually: cloning it and installing dependencies
git clone https://github.com/halleewong/MultiverSeg python -m pip install -r ./MultiverSeg/requirements.txt export PYTHONPATH="$PYTHONPATH:$(realpath ./MultiverSeg)"
Getting Started
First download the model checkpoints
cd checkpoints
./download.sh
Then see ./notebooks/inference.ipynb for a tutorial.
Acknowledgements
This project builds extensively on code originally developed for ScribblePrompt and UniverSeg
Citation
If you find our work or any of our materials useful, please cite our paper:
@article{wong2024multiverseg,
title={MultiverSeg: Scalable Interactive Segmentation of Biomedical Imaging Datasets with In-Context Guidance},
author={Hallee E. Wong and Jose Javier Gonzalez Ortiz and John Guttag and Adrian V. Dalca},
journal={arXiv preprint arXiv:2412.15058},
year={2024},
}
Owner
- Name: Hallee Wong
- Login: halleewong
- Kind: user
- Location: Cambridge, MA
- Company: MIT
- Website: https://halleewong.github.io/
- Repositories: 2
- Profile: https://github.com/halleewong
Citation (CITATION.bib)
@article{wong2024multiverseg,
title={MultiverSeg: Scalable Interactive Segmentation of Biomedical Imaging Datasets with In-Context Guidance},
author={Hallee E. Wong and Jose Javier Gonzalez Ortiz and John Guttag and Adrian V. Dalca},
journal={arXiv preprint arXiv:2412.15058},
year={2024},
}
GitHub Events
Total
- Issues event: 1
- Watch event: 15
- Issue comment event: 1
- Push event: 20
- Public event: 1
- Pull request event: 4
- Fork event: 4
Last Year
- Issues event: 1
- Watch event: 15
- Issue comment event: 1
- Push event: 20
- Public event: 1
- Pull request event: 4
- Fork event: 4
Issues and Pull Requests
Last synced: 6 months ago
All Time
- Total issues: 1
- Total pull requests: 2
- Average time to close issues: N/A
- Average time to close pull requests: about 2 hours
- Total issue authors: 1
- Total pull request authors: 1
- Average comments per issue: 0.0
- Average comments per pull request: 0.0
- Merged pull requests: 1
- Bot issues: 0
- Bot pull requests: 0
Past Year
- Issues: 1
- Pull requests: 2
- Average time to close issues: N/A
- Average time to close pull requests: about 2 hours
- Issue authors: 1
- Pull request authors: 1
- Average comments per issue: 0.0
- Average comments per pull request: 0.0
- Merged pull requests: 1
- Bot issues: 0
- Bot pull requests: 0
Top Authors
Issue Authors
- star-cs (1)
Pull Request Authors
- SebGoll (2)