Science Score: 10.0%

This score indicates how likely this project is to be science-related based on various indicators:

  • CITATION.cff file
  • codemeta.json file
  • .zenodo.json file
  • DOI references
  • Academic publication links
    Links to: science.org
  • Academic email domains
  • Institutional organization owner
  • JOSS paper metadata
  • Scientific vocabulary similarity
    Low similarity (11.6%) to scientific vocabulary
Last synced: 10 months ago · JSON representation

Repository

Basic Info
  • Host: GitHub
  • Owner: pepe454
  • License: other
  • Language: Ruby
  • Default Branch: master
  • Size: 84.3 MB
Statistics
  • Stars: 1
  • Watchers: 1
  • Forks: 2
  • Open Issues: 12
  • Releases: 0
Created over 7 years ago · Last pushed over 3 years ago
Metadata Files
Readme Contributing Citation

README.md

Build Status

SEEK

License

Copyright 2009-2018, University of Manchester and HITS gGmbH

BSD 3-clause

About SEEK

The SEEK platform is a web-based resource for sharing heterogeneous scientific research datasets, models or simulations, processes and research outcomes. It preserves associations between them, along with information about the people and organizations involved. Underpinning SEEK is the ISA infrastructure, a standard format for describing how individual experiments are aggregated into wider studies and investigations. Within SEEK, ISA has been extended and is configurable to allow the structure to be used outside of Biology.

SEEK is incorporating semantic technology allowing sophisticated queries over the data, yet without getting in the way of your users.

For an example of SEEK please visit our Demo.

To see SEEK being used for real science, as part of FAIRDOM please visit FAIRDOM SEEK

For more information please visit: SEEK for Science

FAIRDOM

SEEK is being developed and funded as part of the FAIRDOM initiative. For more information please visit: FAIRDOM.

Installation

We recommend installing SEEK on Debian or Ubuntu.

To install the latest release please visit: SEEK install guide

For details about other distributions and installing on Mac OS X please visit: Other distributions guide

The documentation is available on the ghpages branch.

Contacting Us

For details about how to contact us, to raise bugs or offer suggestion, please visit Contacting Us

Contributing to SEEK

In general :

  1. Fork it ( https://github.com/seek4science/seek/fork )
  2. Create your feature branch (git checkout -b my-new-feature)
  3. Commit your changes (git commit -am 'Add some feature')
  4. Push to the branch (git push origin my-new-feature)
  5. Create a new Pull Request

For more details on how and what you can contribute to SEEK please visit Contributing

Owner

  • Name: Daniel Fryer
  • Login: pepe454
  • Kind: user

GitHub Events

Total
Last Year

Dependencies

Gemfile rubygems
  • database_cleaner >= 0 development
  • guard-rubycritic >= 0 development
  • magic_lamp >= 0 development
  • minitest >= 0 development
  • minitest-reporters >= 0 development
  • pry >= 0 development
  • pry-doc >= 0 development
  • pry-remote >= 0 development
  • quiet_assets >= 0 development
  • rails-perftest >= 0 development
  • rails_best_practices >= 0 development
  • request-log-analyzer >= 0 development
  • rubocop >= 0 development
  • ruby-prof >= 0.16.0 development
  • rubycritic >= 0 development
  • sunspot_matchers >= 0 development
  • teaspoon >= 0 development
  • teaspoon-mocha >= 0 development
  • test-prof >= 0 development
  • test_after_commit >= 0 development
  • vcr ~> 2.9 development
  • webmock >= 0 development
  • RedCloth = 4.2.9
  • active_model_serializers ~> 0.10.2
  • activerecord-session_store >= 0
  • acts-as-taggable-on = 3.0.1
  • acts_as_activity_logged >= 0
  • acts_as_list >= 0
  • acts_as_tree >= 0
  • app_version >= 0
  • attr_encrypted ~> 3.0.0
  • auto_strip_attributes >= 0
  • bibtex-ruby ~> 4.4.2
  • bio ~> 1.5.1
  • bioportal >= 3.0
  • bives >= 0
  • bootstrap-sass >= 0
  • breadcrumbs_on_rails >= 0
  • bundler >= 1.8.4
  • citeproc ~> 1.0.4
  • citeproc-ruby ~> 1.1.4
  • coffee-rails ~> 4.1.0
  • colorize = 0.7.4
  • convert_office >= 0
  • country_select >= 0
  • csl-styles ~> 1.0.1.7
  • daemons >= 0
  • delayed_job_active_record >= 0
  • docsplit >= 0
  • doi_query_tool >= 0
  • dynamic_form >= 0
  • equivalent-xml >= 0
  • exception_notification >= 0
  • factory_girl = 2.6.4
  • feedjira ~> 1
  • fleximage >= 0
  • fssm >= 0
  • gibberish >= 0
  • google-analytics-rails >= 0
  • handlebars_assets >= 0
  • hpricot ~> 0.8.2
  • jbuilder ~> 2.0
  • jbuilder-json_api >= 0
  • jquery-rails ~> 3
  • jquery-ui-rails ~> 3
  • json-diff >= 0
  • json-schema >= 0
  • libxml-ruby = 2.8.0
  • linkeddata >= 0
  • lograge >= 0
  • mechanize >= 0
  • metainspector >= 0
  • mimemagic >= 0
  • my_annotations >= 0
  • my_responds_to_parent >= 0
  • mysql2 >= 0
  • nokogiri ~> 1.8.1
  • omniauth ~> 1.3.1
  • omniauth-ldap ~> 1.0.5
  • openseek-api >= 0
  • passenger >= 0
  • pg >= 0
  • pothoven-attachment_fu >= 0
  • private_address_check >= 0
  • progress_bar >= 0
  • prototype-rails >= 0
  • psych >= 0
  • puma >= 0
  • rack-attack ~> 5.0.1
  • rails ~> 4.2.9
  • rails-assets-bootstrap-multiselect ~> 0.9.13
  • rails-assets-bootstrap-tagsinput ~> 0.8.0
  • rails-assets-clipboard ~> 1.5.12
  • rails-assets-eonasdan-bootstrap-datetimepicker ~> 4.17.42
  • rails-assets-typeahead.js ~> 0.10.5
  • rails-assets-vue ~> 2.1.8
  • rails-assets-x-editable ~> 1.5.1
  • rails-observers >= 0
  • rails_autolink >= 0
  • ransack ~> 1.8.2
  • rdf-virtuoso >= 0.1.6
  • rdoc >= 0
  • recaptcha ~> 4.1.0
  • responders ~> 2.0
  • rest-client ~> 2.0
  • rfc-822 >= 0
  • rmagick = 2.15.2
  • ro-bundle >= 0
  • rspec-rails >= 0
  • rubyzip ~> 1.2.2
  • sample-template-generator ~> 0.5
  • sass-rails >= 0
  • savon = 1.1.0
  • search_biomodel = 2.2.1
  • seedbank >= 0
  • simple-spreadsheet-extractor ~> 0.16.0
  • sprockets-rails ~> 3.2
  • sqlite3 >= 0
  • sunspot_rails ~> 2.2.0
  • sunspot_solr ~> 2.2.0
  • system >= 0
  • terrapin >= 0
  • uglifier >= 0
  • unicorn-rails >= 0
  • uuid ~> 2.3
  • validate_url >= 0
  • white_list >= 0
  • white_list_formatted_content >= 0
  • will_paginate ~> 3.1
  • yaml_db >= 0
  • zenodo-client >= 0
Gemfile.lock rubygems
  • 304 dependencies